Variant report

Variant	rs11638442
Chromosome Location	chr15:74634899-74634900
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74632786..74634914-chr15:74636001..74637651,2	MCF-7	breast:
2	chr15:74632778..74634578-chr15:74634813..74637481,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11072478	0.82[CEU][hapmap]
rs11631552	0.81[AMR][1000 genomes]
rs11632698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11635047	0.96[CEU][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes]
rs12440952	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs12900028	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12905100	0.81[CEU][hapmap]
rs12906092	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12912592	0.87[EUR][1000 genomes]
rs12917295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12917557	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1484210	0.89[CEU][hapmap];0.80[AMR][1000 genomes]
rs1564783	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1809500	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2899825	0.85[CEU][hapmap]
rs2930291	0.84[CEU][hapmap]
rs2930302	0.82[CEU][hapmap]
rs2959008	0.82[CEU][hapmap]
rs2959011	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs34578565	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35807116	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4887134	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4887135	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56339065	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7173655	0.87[AFR][1000 genomes]
rs751527	0.84[EUR][1000 genomes]
rs900801	0.89[CEU][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74612000-74657800	Weak transcription	Right Atrium	heart
2	chr15:74622600-74638600	Weak transcription	Spleen	Spleen
3	chr15:74628000-74642200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr15:74632400-74635200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:74632600-74637400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:74633200-74637000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:74634200-74638200	Genic enhancers	Placenta	Placenta
8	chr15:74634400-74636400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:74634400-74637600	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links