Variant report

Variant	rs35807116
Chromosome Location	chr15:74667953-74667954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74665025..74668014-chr15:74668385..74670407,3	MCF-7	breast:
2	chr15:74666571..74668341-chr15:75112633..75114980,2	MCF-7	breast:
3	chr15:74667817..74669337-chr15:74669430..74671433,2	MCF-7	breast:
4	chr15:74667220..74669467-chr15:74724695..74727732,3	MCF-7	breast:
5	chr15:74667376..74668079-chr15:74927591..74928122,2	K562	blood:
6	chr15:74666941..74668250-chr15:74730746..74731506,5	MCF-7	breast:
7	chr15:74664841..74669022-chr15:74717731..74721779,3	K562	blood:
8	chr15:74666968..74670060-chr15:74726920..74730762,3	K562	blood:
9	chr15:74665568..74668523-chr15:74922376..74925547,4	MCF-7	breast:
10	chr15:74667675..74669712-chr15:74724905..74727427,2	MCF-7	breast:
11	chr15:74662886..74664620-chr15:74666174..74668404,2	MCF-7	breast:
12	chr15:74665982..74668403-chr15:74893258..74895614,2	MCF-7	breast:
13	chr15:74667729..74671338-chr15:74726630..74730433,3	K562	blood:
14	chr15:74667595..74674345-chr15:74676249..74682092,7	K562	blood:
15	chr15:74665832..74668344-chr15:74734420..74737401,2	K562	blood:
16	chr15:74665248..74670570-chr15:74911003..74915113,6	MCF-7	breast:
17	chr15:74667119..74668182-chr15:74730613..74731657,6	MCF-7	breast:
18	chr15:74666929..74668936-chr15:74752727..74754266,2	MCF-7	breast:
19	chr15:74666257..74668996-chr15:74908771..74912295,3	K562	blood:
20	chr15:74667095..74668014-chr15:74781923..74782836,3	MCF-7	breast:
21	chr15:74666408..74668530-chr15:74918193..74920965,2	MCF-7	breast:
22	chr15:74664932..74669170-chr15:74905600..74910371,8	K562	blood:
23	chr15:74667889..74669756-chr15:74688977..74690702,2	MCF-7	breast:
24	chr15:74665255..74670127-chr15:74905870..74910808,10	MCF-7	breast:
25	chr15:74667692..74668588-chr15:74730533..74731730,4	K562	blood:
26	chr15:74667276..74668170-chr15:74753089..74753827,2	MCF-7	breast:
27	chr15:74667641..74668257-chr15:74913258..74913984,2	K562	blood:
28	chr15:74667308..74668166-chr15:75092202..75092744,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138623	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000261775	Chromatin interaction
ENSG00000260103	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000179151	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000138629	Chromatin interaction
ENSG00000247240	Chromatin interaction
ENSG00000261606	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11632698	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11635047	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11638442	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12900028	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12912592	0.83[EUR][1000 genomes]
rs12917295	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12917557	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564783	0.85[EUR][1000 genomes]
rs34578565	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4887134	0.80[EUR][1000 genomes]
rs4887135	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs56339065	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74666600-74673200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:74667000-74668000	Enhancers	Fetal Thymus	thymus
3	chr15:74667000-74671200	Weak transcription	Thymus	Thymus
4	chr15:74667000-74671400	Weak transcription	Lung	lung
5	chr15:74667200-74668000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr15:74667200-74668000	Enhancers	Primary B cells from peripheral blood	blood
7	chr15:74667200-74668000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr15:74667200-74668000	Enhancers	Dnd41	blood
9	chr15:74667200-74676400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:74667400-74671200	Weak transcription	Esophagus	oesophagus
11	chr15:74667400-74673600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:74667400-74676800	Weak transcription	Colonic Mucosa	Colon
13	chr15:74667400-74691200	Enhancers	Placenta	Placenta
14	chr15:74667600-74668000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:74667600-74668800	Weak transcription	Fetal Brain Female	brain
16	chr15:74667600-74669400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:74667600-74670000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:74667600-74670600	Weak transcription	Primary T cells from cord blood	blood
19	chr15:74667600-74670600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:74667600-74670600	Weak transcription	HSMMtube	muscle
21	chr15:74667600-74671200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr15:74667600-74671200	Enhancers	GM12878-XiMat	blood
23	chr15:74667600-74671200	Weak transcription	HSMM	muscle
24	chr15:74667600-74671200	Weak transcription	HUVEC	blood vessel
25	chr15:74667600-74671400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:74667600-74671400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr15:74667600-74671400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr15:74667600-74671600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr15:74667600-74673800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:74667600-74674000	Weak transcription	NHDF-Ad	bronchial
31	chr15:74667600-74674600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:74667600-74675600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr15:74667600-74675800	Weak transcription	A549	lung
34	chr15:74667600-74676000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr15:74667600-74677600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:74667600-74677600	Weak transcription	Right Atrium	heart
37	chr15:74667800-74669400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr15:74667800-74670400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:74667800-74670600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr15:74667800-74670600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:74667800-74670600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:74667800-74670600	Weak transcription	HMEC	breast
43	chr15:74667800-74670600	Weak transcription	NHEK	skin
44	chr15:74667800-74671000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr15:74667800-74671000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:74667800-74671000	Weak transcription	NH-A	brain
47	chr15:74667800-74671200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr15:74667800-74671200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:74667800-74671200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr15:74667800-74671200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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