Variant report

Variant	rs4887135
Chromosome Location	chr15:74619663-74619664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74419797..74420308-chr15:74619601..74620406,2	K562	blood:
2	chr15:74614136..74616902-chr15:74617695..74620669,2	K562	blood:
3	chr15:74618878..74621837-chr15:74625148..74627418,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11072478	0.82[CEU][hapmap]
rs11631552	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11632698	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11635047	0.96[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs11638442	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12440952	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs12900028	0.93[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12905100	0.81[CEU][hapmap]
rs12906092	0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12912592	0.83[EUR][1000 genomes]
rs12917295	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12917557	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs1484210	0.89[CEU][hapmap];0.84[AMR][1000 genomes]
rs1484216	0.80[EUR][1000 genomes]
rs1564783	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1809500	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2899825	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2930291	0.84[CEU][hapmap]
rs2930302	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs2959005	0.80[EUR][1000 genomes]
rs2959006	0.80[EUR][1000 genomes]
rs2959008	0.82[CEU][hapmap]
rs2959011	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs34578565	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35807116	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4887134	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56339065	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs751527	0.88[EUR][1000 genomes]
rs900801	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74604800-74623400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr15:74612000-74657800	Weak transcription	Right Atrium	heart
3	chr15:74616800-74620400	Enhancers	Placenta	Placenta
4	chr15:74616800-74621200	Enhancers	Spleen	Spleen
5	chr15:74617000-74622000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74617600-74621400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr15:74617800-74620200	Weak transcription	Fetal Thymus	thymus
8	chr15:74618400-74621000	Enhancers	Fetal Muscle Leg	muscle
9	chr15:74618600-74619800	Enhancers	Ovary	ovary
10	chr15:74618600-74620000	Enhancers	Fetal Muscle Trunk	muscle
11	chr15:74618800-74621000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:74618800-74621000	Enhancers	Primary hematopoietic stem cells	blood
13	chr15:74618800-74621400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr15:74618800-74621400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr15:74619000-74621400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:74619000-74621400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:74619200-74620400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:74619200-74621200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:74619400-74620000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:74619400-74620400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr15:74619400-74620400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:74619600-74620000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr15:74619600-74620000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:74619600-74620600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:74619600-74620800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr15:74619600-74620800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr15:74619600-74621000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:74619600-74626400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links