Variant report

Variant	rs2959006
Chromosome Location	chr15:74617955-74617956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74617190..74619532-chr15:74620304..74624205,4	K562	blood:
2	chr15:74614136..74616902-chr15:74617695..74620669,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11072478	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11632698	0.82[CEU][hapmap]
rs12440952	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12914852	0.81[EUR][1000 genomes]
rs12916123	0.84[CEU][hapmap]
rs1484216	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564782	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs1843090	0.84[CEU][hapmap]
rs1843091	0.85[CEU][hapmap]
rs2277601	0.89[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2277602	0.88[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2277605	0.85[EUR][1000 genomes]
rs2277606	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2279356	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs2279357	0.84[CEU][hapmap]
rs2415239	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2930291	0.82[CEU][hapmap]
rs2930300	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2930301	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2930302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2930304	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2930305	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2930306	0.84[CEU][hapmap]
rs2959004	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2959005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2959007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2959008	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2959011	0.92[CEU][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4077581	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs4077582	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs4887135	0.80[EUR][1000 genomes]
rs6495096	0.85[CEU][hapmap]
rs68021814	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7174179	0.84[CEU][hapmap]
rs733434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs751527	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs751528	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8031424	0.88[CEU][hapmap]
rs900799	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs900800	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs900802	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74604800-74623400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr15:74612000-74657800	Weak transcription	Right Atrium	heart
3	chr15:74612800-74618600	Weak transcription	Ovary	ovary
4	chr15:74613000-74618800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr15:74613200-74619000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:74613200-74619000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:74613400-74618800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:74613400-74618800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:74613400-74618800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:74613400-74619200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:74615400-74619000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:74615400-74619000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:74616800-74620400	Enhancers	Placenta	Placenta
14	chr15:74616800-74621200	Enhancers	Spleen	Spleen
15	chr15:74617000-74622000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:74617400-74618000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr15:74617400-74619600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:74617600-74621400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr15:74617800-74618800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:74617800-74619000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:74617800-74620200	Weak transcription	Fetal Thymus	thymus

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