Variant report

Variant	rs11632698
Chromosome Location	chr15:74637867-74637868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74632720..74634686-chr15:74636521..74639007,2	MCF-7	breast:
2	chr15:74606974..74610112-chr15:74636759..74639139,3	K562	blood:
3	chr15:74628941..74630782-chr15:74637819..74639455,2	K562	blood:
4	chr15:74607938..74610112-chr15:74637389..74639139,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11072478	0.82[CEU][hapmap]
rs11635047	0.96[CEU][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs11638442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12440952	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs12900028	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12905100	0.84[CEU][hapmap]
rs12906092	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12912592	0.87[EUR][1000 genomes]
rs12917295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917557	0.87[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1484210	0.88[CEU][hapmap]
rs1484216	0.81[CEU][hapmap]
rs1564783	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1809500	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2899825	0.85[CEU][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs2930291	0.84[CEU][hapmap]
rs2930300	0.82[CEU][hapmap]
rs2930302	0.82[CEU][hapmap]
rs2959006	0.82[CEU][hapmap]
rs2959007	0.82[CEU][hapmap]
rs2959008	0.82[CEU][hapmap]
rs2959011	0.92[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs34578565	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35807116	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4887134	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4887135	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56339065	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs751527	0.84[EUR][1000 genomes]
rs900801	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11632698	SEMA7A	cis	cerebellum	SCAN
rs11632698	C15orf39	cis	cerebellum	SCAN
rs11632698	RPLP1	cis	parietal	SCAN
rs11632698	C15orf28	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74612000-74657800	Weak transcription	Right Atrium	heart
2	chr15:74622600-74638600	Weak transcription	Spleen	Spleen
3	chr15:74628000-74642200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr15:74634200-74638200	Genic enhancers	Placenta	Placenta
5	chr15:74636400-74638000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:74637000-74638200	Enhancers	HUVEC	blood vessel
7	chr15:74637000-74638200	Enhancers	NH-A	brain
8	chr15:74637000-74638400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:74637400-74638000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:74637400-74638000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr15:74637600-74638000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:74637600-74638000	Flanking Active TSS	Hela-S3	cervix
13	chr15:74637600-74638200	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links