Variant report

Variant	rs12905100
Chromosome Location	chr15:74601813-74601814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74421619..74423778-chr15:74601756..74604388,2	K562	blood:
2	chr15:74422278..74424781-chr15:74601756..74603801,2	K562	blood:
3	chr15:74592716..74594518-chr15:74600269..74602108,2	K562	blood:
4	chr15:74599667..74601173-chr15:74601767..74604366,2	K562	blood:
5	chr15:74594780..74601167-chr15:74601665..74605713,5	K562	blood:

Variant related genes	Relation type
ENSG00000261384	Chromatin interaction
ENSG00000167178	Chromatin interaction
ENSG00000248540	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11072478	0.81[CEU][hapmap]
rs11631552	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11632698	0.84[CEU][hapmap]
rs11634685	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs11635047	0.80[CEU][hapmap]
rs11638442	0.81[CEU][hapmap]
rs11856695	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12906092	0.89[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12913522	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12917295	0.83[CEU][hapmap]
rs1484210	0.92[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1564783	0.81[CEU][hapmap]
rs1809500	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2279378	0.96[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2899825	0.81[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs2930291	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2930302	0.81[CEU][hapmap]
rs2959008	0.81[CEU][hapmap]
rs351184	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs397074	0.83[EUR][1000 genomes]
rs4887131	0.93[CEU][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs4887132	0.87[EUR][1000 genomes]
rs4887134	0.85[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs4887135	0.81[CEU][hapmap]
rs900799	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs900800	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs900801	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74584200-74607400	Weak transcription	Right Atrium	heart
2	chr15:74594000-74602000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr15:74596600-74606600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:74596600-74609800	Weak transcription	A549	lung
5	chr15:74598200-74602000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:74600800-74603200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:74601200-74602000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:74601200-74607800	Weak transcription	Fetal Lung	lung
9	chr15:74601400-74603800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:74601600-74602000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:74601600-74602000	Enhancers	Fetal Brain Female	brain
12	chr15:74601600-74602200	Enhancers	Brain Germinal Matrix	brain
13	chr15:74601600-74604000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:74601800-74603000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:74601800-74603000	Weak transcription	Fetal Brain Male	brain
16	chr15:74601800-74603200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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