Variant report

Variant	rs900799
Chromosome Location	chr15:74607506-74607507
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr15:74607420-74607801	K562	blood:	n/a	n/a
2	MAX	chr15:74607375-74607885	K562	blood:	n/a	n/a
3	E2F6	chr15:74607504-74607758	K562	blood:	n/a	n/a
4	MYC	chr15:74607159-74608839	NB4	blood:	n/a	n/a
5	MYC	chr15:74607502-74607706	K562	blood:	n/a	n/a
6	JUND	chr15:74607497-74607747	K562	blood:	n/a	n/a
7	MAX	chr15:74607432-74607775	K562	blood:	n/a	n/a
8	MAX	chr15:74607072-74608773	NB4	blood:	n/a	n/a
9	MAZ	chr15:74607462-74607734	K562	blood:	n/a	n/a
10	RCOR1	chr15:74607479-74608229	K562	blood:	n/a	n/a
11	POLR2A	chr15:74607358-74608379	GM12892	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74606352..74608320-chr15:74608433..74611156,2	K562	blood:
2	chr15:74606974..74610112-chr15:74636759..74639139,3	K562	blood:
3	chr15:74284861..74287679-chr15:74606121..74609099,2	MCF-7	breast:

No data

Variant related genes	Relation type
CCDC33	TF binding region
ENSG00000140481	Chromatin interaction
ENSG00000067221	Chromatin interaction
ENSG00000140464	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11072478	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11631552	0.81[EUR][1000 genomes]
rs11634685	0.80[CEU][hapmap]
rs12440952	0.84[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs12905100	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs12906092	0.81[EUR][1000 genomes]
rs12913522	0.81[EUR][1000 genomes]
rs12917295	0.80[YRI][hapmap]
rs1484210	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs1484216	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1564782	0.81[CEU][hapmap]
rs1809500	0.80[EUR][1000 genomes]
rs2277601	0.82[CEU][hapmap]
rs2277602	0.81[CEU][hapmap]
rs2279356	0.81[CEU][hapmap]
rs2279378	0.81[CEU][hapmap]
rs2415239	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2930291	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs2930300	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2930301	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2930302	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2930304	0.81[CEU][hapmap]
rs2959004	0.81[CEU][hapmap]
rs2959005	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2959006	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2959007	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2959008	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2959011	0.87[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs351184	0.80[CEU][hapmap]
rs351189	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs397074	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4077581	0.80[CEU][hapmap]
rs68021814	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs733434	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs751527	0.85[ASN][1000 genomes]
rs751528	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8031424	0.81[CEU][hapmap]
rs900800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs900801	0.82[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74596600-74609800	Weak transcription	A549	lung
2	chr15:74601200-74607800	Weak transcription	Fetal Lung	lung
3	chr15:74603000-74610800	Enhancers	Fetal Brain Male	brain
4	chr15:74604200-74613400	Enhancers	Placenta	Placenta
5	chr15:74604400-74613200	Enhancers	Fetal Thymus	thymus
6	chr15:74604600-74608400	Weak transcription	Hela-S3	cervix
7	chr15:74604800-74623400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:74605200-74607800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:74605200-74608000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:74605200-74613400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr15:74605400-74607600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:74605400-74611200	Enhancers	Fetal Muscle Trunk	muscle
13	chr15:74605600-74610200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr15:74606000-74609000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:74606000-74609400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:74606200-74607600	Enhancers	Primary T cells from cord blood	blood
17	chr15:74606200-74608200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:74606200-74608400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:74606200-74608600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr15:74606200-74609000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr15:74606200-74612600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:74606200-74613400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:74606400-74608200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr15:74606400-74608200	Enhancers	Placenta Amnion	Placenta Amnion
25	chr15:74606400-74608200	Enhancers	Thymus	Thymus
26	chr15:74606400-74608800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr15:74606400-74613400	Enhancers	Fetal Muscle Leg	muscle
28	chr15:74606600-74607600	Enhancers	GM12878-XiMat	blood
29	chr15:74606600-74608000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr15:74606600-74608200	Enhancers	H9 Cell Line	embryonic stem cell
31	chr15:74606600-74608200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr15:74606600-74608800	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr15:74606600-74611200	Enhancers	Brain Germinal Matrix	brain
34	chr15:74606600-74613400	Enhancers	Fetal Brain Female	brain
35	chr15:74607000-74607600	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr15:74607000-74608200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr15:74607000-74608200	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr15:74607000-74608400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr15:74607000-74608400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:74607000-74608400	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr15:74607000-74608400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:74607000-74608800	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr15:74607000-74611400	Enhancers	NH-A	brain
44	chr15:74607000-74613000	Enhancers	Primary hematopoietic stem cells	blood
45	chr15:74607200-74607600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:74607200-74607600	Enhancers	Spleen	Spleen
47	chr15:74607200-74607800	Bivalent Enhancer	Fetal Stomach	stomach
48	chr15:74607200-74608000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:74607200-74608000	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr15:74607200-74608000	Enhancers	Muscle Satellite Cultured Cells	--

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