Variant report

Variant	rs751528
Chromosome Location	chr15:74611182-74611183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74500084..74502169-chr15:74610783..74612337,2	K562	blood:

Variant related genes	Relation type
ENSG00000137868	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11072478	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12440952	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1484216	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1564782	0.82[EUR][1000 genomes]
rs2277601	0.81[EUR][1000 genomes]
rs2277602	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2277605	0.81[EUR][1000 genomes]
rs2279356	0.82[EUR][1000 genomes]
rs2415239	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2930300	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2930301	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2930302	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2930304	0.81[EUR][1000 genomes]
rs2959005	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2959006	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2959007	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2959008	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2959011	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68021814	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs733434	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs751527	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs900799	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs900800	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74604200-74613400	Enhancers	Placenta	Placenta
2	chr15:74604400-74613200	Enhancers	Fetal Thymus	thymus
3	chr15:74604800-74623400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr15:74605200-74613400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr15:74605400-74611200	Enhancers	Fetal Muscle Trunk	muscle
6	chr15:74606200-74612600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:74606200-74613400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:74606400-74613400	Enhancers	Fetal Muscle Leg	muscle
9	chr15:74606600-74611200	Enhancers	Brain Germinal Matrix	brain
10	chr15:74606600-74613400	Enhancers	Fetal Brain Female	brain
11	chr15:74607000-74611400	Enhancers	NH-A	brain
12	chr15:74607000-74613000	Enhancers	Primary hematopoietic stem cells	blood
13	chr15:74607200-74611600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:74607200-74611800	Enhancers	Left Ventricle	heart
15	chr15:74607200-74612000	Enhancers	Right Ventricle	heart
16	chr15:74607200-74612600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:74607200-74613000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:74607200-74613200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr15:74607200-74613400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr15:74607400-74613200	Enhancers	Adipose Nuclei	Adipose
21	chr15:74607600-74611600	Enhancers	HSMMtube	muscle
22	chr15:74607600-74613400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:74607800-74612000	Enhancers	NHLF	lung
24	chr15:74607800-74613000	Enhancers	Fetal Stomach	stomach
25	chr15:74608000-74612600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:74608000-74613000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:74608200-74611200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr15:74608200-74613200	Enhancers	GM12878-XiMat	blood
29	chr15:74608400-74611400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr15:74608400-74613400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:74608600-74611600	Weak transcription	Primary T cells from cord blood	blood
32	chr15:74608600-74611800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr15:74608800-74611600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr15:74608800-74612200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr15:74608800-74613200	Enhancers	Stomach Smooth Muscle	stomach
36	chr15:74609200-74613000	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr15:74609600-74611400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:74609600-74612000	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr15:74609600-74612200	Enhancers	Stomach Mucosa	stomach
40	chr15:74609600-74612800	Enhancers	Fetal Intestine Small	intestine
41	chr15:74609600-74613000	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr15:74609600-74613200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:74609800-74611200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:74609800-74611200	Enhancers	Primary B cells from cord blood	blood
45	chr15:74609800-74611800	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr15:74609800-74611800	Enhancers	Fetal Lung	lung
47	chr15:74609800-74612400	Enhancers	Placenta Amnion	Placenta Amnion
48	chr15:74609800-74612400	Enhancers	HSMM	muscle
49	chr15:74609800-74612800	Enhancers	Primary B cells from peripheral blood	blood
50	chr15:74609800-74612800	Enhancers	Ovary	ovary

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