Variant report

Variant	rs351189
Chromosome Location	chr15:74593169-74593170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74592716..74594518-chr15:74600269..74602108,2	K562	blood:
2	chr15:74428007..74429693-chr15:74592908..74594435,2	MCF-7	breast:
3	chr15:74585941..74588102-chr15:74592216..74594032,2	MCF-7	breast:
4	chr15:74585072..74587120-chr15:74590756..74593665,2	MCF-7	breast:
5	chr15:74592052..74594965-chr15:74595191..74598111,2	MCF-7	breast:
6	chr15:74422335..74425180-chr15:74593097..74594756,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ISLR-2	chr15:74592999-74593170	NONHSAT047222

No data

Variant related genes	Relation type
ENSG00000167178	Chromatin interaction
ENSG00000261384	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11634685	0.81[EUR][1000 genomes]
rs11856695	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12440952	0.81[ASN][1000 genomes]
rs2279378	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2959011	0.84[ASN][1000 genomes]
rs351184	0.81[EUR][1000 genomes]
rs397074	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs413150	0.84[EUR][1000 genomes]
rs4887131	0.81[EUR][1000 genomes]
rs4887132	0.81[EUR][1000 genomes]
rs751527	0.83[ASN][1000 genomes]
rs900799	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs900800	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74584200-74607400	Weak transcription	Right Atrium	heart
2	chr15:74591600-74597400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr15:74592000-74594000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:74592200-74593600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr15:74592400-74593800	Weak transcription	Fetal Brain Male	brain
6	chr15:74592400-74594000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:74592400-74596600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:74592400-74596800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:74592600-74594000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:74592800-74593400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:74592800-74593400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chr15:74592800-74593800	Weak transcription	Fetal Brain Female	brain
13	chr15:74592800-74594000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr15:74592800-74594000	Weak transcription	Brain Germinal Matrix	brain
15	chr15:74592800-74597000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
16	chr15:74592800-74597000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
17	chr15:74592800-74597000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr15:74593000-74593600	ZNF genes & repeats	Spleen	Spleen
19	chr15:74593000-74594400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
20	chr15:74593000-74595400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

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