Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10518760	0.90[EUR][1000 genomes]
rs11071064	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11635678	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11856476	0.90[EUR][1000 genomes]
rs12439702	0.87[ASN][1000 genomes]
rs12441013	0.95[CHB][hapmap];0.82[JPT][hapmap];0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12899415	0.90[EUR][1000 genomes]
rs12899426	0.90[EUR][1000 genomes]
rs12901994	0.85[CEU][hapmap]
rs12902112	0.88[EUR][1000 genomes]
rs12906606	1.00[CEU][hapmap]
rs12908409	1.00[CEU][hapmap]
rs12911007	1.00[CEU][hapmap]
rs12911506	1.00[CEU][hapmap]
rs2414287	1.00[CEU][hapmap]
rs2899536	1.00[CEU][hapmap]
rs4144949	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs8023723	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs8024165	0.85[CEU][hapmap]
rs8025731	0.90[EUR][1000 genomes]
rs8027105	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs8030298	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs8033291	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs8036716	0.85[CEU][hapmap]
rs8039848	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1043666	chr15:54415970-54548495	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1043823	chr15:54468477-54532985	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54516800-54529000	Weak transcription	Fetal Lung	lung
2	chr15:54519000-54554400	Weak transcription	Aorta	Aorta
3	chr15:54519400-54549600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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