Variant report

Variant	rs12439702
Chromosome Location	chr15:54533443-54533444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11071065	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs11071066	0.96[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs11630366	0.92[CEU][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11630766	1.00[CEU][hapmap]
rs11635437	0.96[CEU][hapmap]
rs11635678	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12441013	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12900325	0.81[EUR][1000 genomes]
rs12902524	0.84[CEU][hapmap]
rs12903297	0.96[CEU][hapmap];0.95[TSI][hapmap]
rs12903779	0.82[CEU][hapmap]
rs12908083	0.84[CEU][hapmap]
rs12914912	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs12916984	0.84[CEU][hapmap]
rs12917198	0.84[CEU][hapmap]
rs12917522	0.87[ASN][1000 genomes]
rs2414285	1.00[CEU][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2414288	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4144949	1.00[CEU][hapmap];0.85[GIH][hapmap];0.81[LWK][hapmap];0.93[TSI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4517736	0.84[CEU][hapmap]
rs4569201	0.85[EUR][1000 genomes]
rs4774691	0.96[CEU][hapmap]
rs4776216	0.96[CEU][hapmap]
rs4776219	0.88[CEU][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs4776220	0.84[CEU][hapmap]
rs4776222	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs5025252	0.92[CEU][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs5027653	0.86[EUR][1000 genomes]
rs6493669	0.92[CEU][hapmap]
rs6493670	0.92[CEU][hapmap];0.86[TSI][hapmap]
rs7162346	0.96[CEU][hapmap];0.85[TSI][hapmap]
rs7170994	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7172577	0.84[CEU][hapmap]
rs7183952	0.96[CEU][hapmap];0.85[TSI][hapmap]
rs8023723	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8026128	0.88[CEU][hapmap]
rs8027105	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8030298	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8030563	0.85[EUR][1000 genomes]
rs8031083	0.84[CEU][hapmap]
rs8032432	0.96[CEU][hapmap]
rs8033291	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8034428	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs8038466	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1043666	chr15:54415970-54548495	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54519000-54554400	Weak transcription	Aorta	Aorta
2	chr15:54519400-54549600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:54531400-54544800	Weak transcription	Fetal Lung	lung

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