Variant report

Variant	rs8031083
Chromosome Location	chr15:54578465-54578466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11071065	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs11071066	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs11630366	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs11630766	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs11635437	0.89[CEU][hapmap];0.81[YRI][hapmap]
rs11638408	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11638986	0.92[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12439702	0.84[CEU][hapmap]
rs12441013	0.81[CEU][hapmap]
rs12900325	0.89[EUR][1000 genomes]
rs12902524	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12903297	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs12903779	0.91[CEU][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes]
rs12907062	0.84[AFR][1000 genomes]
rs12908083	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12911007	0.91[YRI][hapmap];0.91[AFR][1000 genomes]
rs12912246	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12913239	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12914912	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs12915061	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12916984	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12917198	0.92[CEU][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12917364	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2414285	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2414288	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs2414294	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2899536	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs4144949	0.88[CEU][hapmap]
rs4517736	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4774691	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs4776216	0.81[CEU][hapmap]
rs4776219	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4776220	0.92[CEU][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4776222	0.84[CEU][hapmap]
rs5025252	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs5027653	0.84[EUR][1000 genomes]
rs6493669	0.84[CEU][hapmap]
rs6493670	0.84[CEU][hapmap]
rs6493674	0.80[EUR][1000 genomes]
rs7170994	0.85[EUR][1000 genomes]
rs7172577	0.92[CEU][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7183952	0.80[CEU][hapmap]
rs8026128	0.96[CEU][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8028549	0.84[AFR][1000 genomes]
rs8030563	0.87[EUR][1000 genomes]
rs8032432	0.81[CEU][hapmap]
rs8034428	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs8038466	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung

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