Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:54553109..54555656-chr15:54556214..54557724,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137766	Chromatin interaction

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10851563	0.83[EUR][1000 genomes]
rs11071065	0.96[EUR][1000 genomes]
rs11071066	0.91[EUR][1000 genomes]
rs11630366	0.96[EUR][1000 genomes]
rs11630766	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11635242	0.83[EUR][1000 genomes]
rs11638408	0.81[EUR][1000 genomes]
rs11638986	0.80[EUR][1000 genomes]
rs12439702	0.85[EUR][1000 genomes]
rs12900325	0.91[EUR][1000 genomes]
rs12902524	0.81[EUR][1000 genomes]
rs12903297	0.87[EUR][1000 genomes]
rs12908083	0.81[EUR][1000 genomes]
rs12912246	0.80[EUR][1000 genomes]
rs12913239	0.80[EUR][1000 genomes]
rs12914912	0.96[EUR][1000 genomes]
rs12916984	0.80[EUR][1000 genomes]
rs12917198	0.80[EUR][1000 genomes]
rs12917364	0.80[EUR][1000 genomes]
rs2414285	0.92[EUR][1000 genomes]
rs2414288	0.96[EUR][1000 genomes]
rs4144949	0.84[EUR][1000 genomes]
rs4517736	0.81[EUR][1000 genomes]
rs4569201	0.84[EUR][1000 genomes]
rs4774691	0.89[EUR][1000 genomes]
rs4776219	0.89[EUR][1000 genomes]
rs4776222	0.83[EUR][1000 genomes]
rs5025252	0.96[EUR][1000 genomes]
rs5027653	0.96[EUR][1000 genomes]
rs58301914	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6493669	0.84[EUR][1000 genomes]
rs6493670	0.83[EUR][1000 genomes]
rs7169339	0.83[EUR][1000 genomes]
rs7170994	0.97[EUR][1000 genomes]
rs7172577	0.81[EUR][1000 genomes]
rs8026128	0.92[EUR][1000 genomes]
rs8031083	0.87[EUR][1000 genomes]
rs8034428	0.96[EUR][1000 genomes]
rs8038466	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3362314	chr15:54551360-54556658	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3343141	chr15:54551985-54554208	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54519000-54554400	Weak transcription	Aorta	Aorta
2	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung

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