Variant report

Variant	rs12917749
Chromosome Location	chr16:70663272-70663273
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11865702	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12051132	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12596022	0.86[ASN][1000 genomes]
rs12596821	0.85[ASN][1000 genomes]
rs12596851	0.86[ASN][1000 genomes]
rs12596861	0.84[ASN][1000 genomes]
rs12596931	0.89[ASN][1000 genomes]
rs12599245	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12708905	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12924106	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12928124	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13330163	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2864754	0.88[EUR][1000 genomes]
rs34538878	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34878593	0.83[ASN][1000 genomes]
rs3813904	0.89[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4985412	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4985539	0.88[ASN][1000 genomes]
rs4985540	0.88[ASN][1000 genomes]
rs4985544	0.81[ASN][1000 genomes]
rs4985548	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4985555	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6499328	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6499329	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6499330	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7193968	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72792838	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8046424	0.82[CEU][hapmap]
rs8053536	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8061569	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8061854	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70647400-70669200	Weak transcription	Right Atrium	heart
2	chr16:70647800-70664800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr16:70659200-70668800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr16:70661200-70669000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr16:70661800-70665000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr16:70663000-70666400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr16:70663000-70669000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:70663200-70663400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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