Variant report

Variant	rs12596022
Chromosome Location	chr16:70658187-70658188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11865702	0.85[ASN][1000 genomes]
rs12051132	0.86[ASN][1000 genomes]
rs12596821	0.83[ASN][1000 genomes]
rs12596851	0.85[ASN][1000 genomes]
rs12596861	0.82[ASN][1000 genomes]
rs12596931	0.87[ASN][1000 genomes]
rs12599245	0.87[ASN][1000 genomes]
rs12708905	0.89[ASN][1000 genomes]
rs12917749	0.86[ASN][1000 genomes]
rs12924106	0.89[ASN][1000 genomes]
rs12928124	0.83[ASN][1000 genomes]
rs12932251	0.80[AFR][1000 genomes]
rs13330163	0.89[ASN][1000 genomes]
rs34538878	0.89[ASN][1000 genomes]
rs34878593	0.82[ASN][1000 genomes]
rs3813904	0.85[ASN][1000 genomes]
rs4985412	0.89[ASN][1000 genomes]
rs4985539	0.86[ASN][1000 genomes]
rs4985540	0.87[ASN][1000 genomes]
rs4985541	0.81[EUR][1000 genomes]
rs4985544	0.86[ASN][1000 genomes]
rs4985548	0.89[ASN][1000 genomes]
rs6499328	0.87[ASN][1000 genomes]
rs6499329	0.86[ASN][1000 genomes]
rs6499330	0.86[ASN][1000 genomes]
rs7193968	0.86[ASN][1000 genomes]
rs72792838	0.86[ASN][1000 genomes]
rs8053536	0.89[ASN][1000 genomes]
rs8061569	0.85[ASN][1000 genomes]
rs8061854	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14380	chr16:70650573-70660117	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70647400-70669200	Weak transcription	Right Atrium	heart
2	chr16:70647800-70664800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr16:70656200-70659000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:70657400-70658400	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr16:70657400-70658400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr16:70657400-70661400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr16:70657600-70658200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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