Variant report

Variant	rs4985541
Chromosome Location	chr16:70657611-70657612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12051132	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12596022	0.81[EUR][1000 genomes]
rs12596821	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12596851	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12596861	0.84[AMR][1000 genomes]
rs12596931	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12599245	0.83[ASN][1000 genomes]
rs12932251	0.84[EUR][1000 genomes]
rs13330163	0.80[EUR][1000 genomes]
rs34878593	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4985539	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4985540	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4985542	0.81[EUR][1000 genomes]
rs4985543	0.88[EUR][1000 genomes]
rs4985544	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14380	chr16:70650573-70660117	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4985541	IL34	cis	lung	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70647400-70669200	Weak transcription	Right Atrium	heart
2	chr16:70647800-70664800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr16:70656200-70659000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:70657400-70658400	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr16:70657400-70658400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr16:70657400-70661400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr16:70657600-70658200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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