Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10871391	0.88[ASN][1000 genomes]
rs11861803	0.84[ASN][1000 genomes]
rs12448651	0.87[ASN][1000 genomes]
rs12716895	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12931703	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452505	0.80[AMR][1000 genomes]
rs2873085	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34889599	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4061956	0.82[ASN][1000 genomes]
rs4344764	0.94[ASN][1000 genomes]
rs4366717	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4462607	0.96[ASN][1000 genomes]
rs4536490	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4550468	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4613082	0.83[ASN][1000 genomes]
rs4888105	0.83[ASN][1000 genomes]
rs4889188	0.87[ASN][1000 genomes]
rs4889189	0.86[ASN][1000 genomes]
rs4889190	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4889191	0.81[ASN][1000 genomes]
rs7189183	0.80[ASN][1000 genomes]
rs8048112	0.81[ASN][1000 genomes]
rs8053722	0.81[ASN][1000 genomes]
rs8055716	0.95[ASN][1000 genomes]
rs9888872	0.81[ASN][1000 genomes]
rs9889160	0.87[ASN][1000 genomes]
rs9930141	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1058764	chr16:80656966-80707848	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1057357	chr16:80662770-80794945	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80646600-80687800	Weak transcription	Pancreas	Pancrea
2	chr16:80663200-80690200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr16:80667400-80690000	Weak transcription	Spleen	Spleen
4	chr16:80674400-80687800	Weak transcription	Hela-S3	cervix
5	chr16:80674400-80707600	Weak transcription	Placenta	Placenta
6	chr16:80683600-80684800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr16:80683600-80684800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr16:80683600-80685000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr16:80683800-80684800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr16:80684000-80684800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr16:80684000-80684800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr16:80684000-80684800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr16:80684600-80684800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr16:80684600-80684800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr16:80684600-80690400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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