Variant report

Variant	rs4889188
Chromosome Location	chr16:80684377-80684378
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10871391	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11861803	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12444299	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12448651	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12716895	0.80[ASN][1000 genomes]
rs12920375	0.87[ASN][1000 genomes]
rs12931703	0.87[ASN][1000 genomes]
rs13331233	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1377119	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2123284	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2873085	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34889599	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4061956	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4344764	0.81[ASN][1000 genomes]
rs4366717	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4462607	0.83[ASN][1000 genomes]
rs4536490	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4545833	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4613082	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4888105	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4889189	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4889191	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4889192	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4889193	0.87[ASN][1000 genomes]
rs8048112	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8053722	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8055716	0.82[ASN][1000 genomes]
rs9888872	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9889160	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9930141	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9931314	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1058764	chr16:80656966-80707848	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1057357	chr16:80662770-80794945	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80646600-80687800	Weak transcription	Pancreas	Pancrea
2	chr16:80663200-80690200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr16:80667400-80690000	Weak transcription	Spleen	Spleen
4	chr16:80674400-80687800	Weak transcription	Hela-S3	cervix
5	chr16:80674400-80707600	Weak transcription	Placenta	Placenta
6	chr16:80678000-80684600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr16:80683600-80684600	Enhancers	Primary B cells from peripheral blood	blood
8	chr16:80683600-80684800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr16:80683600-80684800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr16:80683600-80685000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr16:80683800-80684800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr16:80684000-80684800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr16:80684000-80684800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr16:80684000-80684800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr16:80684200-80684400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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