Variant report

Variant	rs12921025
Chromosome Location	chr16:69822184-69822185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr16:69821702-69822214	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000252443	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10852459	0.96[EUR][1000 genomes]
rs2937125	0.84[EUR][1000 genomes]
rs2965755	0.82[EUR][1000 genomes]
rs4985530	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4985547	0.96[EUR][1000 genomes]
rs62050042	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69797600-69853400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:69803000-69823400	Weak transcription	Right Ventricle	heart
3	chr16:69803400-69830200	Weak transcription	Fetal Heart	heart
4	chr16:69806800-69830200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr16:69806800-69833000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr16:69807000-69822200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr16:69807000-69822400	Weak transcription	Fetal Kidney	kidney
8	chr16:69807000-69830200	Weak transcription	NHDF-Ad	bronchial
9	chr16:69807000-69832000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr16:69807200-69830200	Weak transcription	Osteobl	bone
11	chr16:69807200-69832600	Weak transcription	NHLF	lung
12	chr16:69807200-69832800	Weak transcription	Pancreas	Pancrea
13	chr16:69807200-69852400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:69807200-69852800	Weak transcription	Hela-S3	cervix
15	chr16:69807200-69854800	Weak transcription	Psoas Muscle	Psoas
16	chr16:69808000-69833200	Weak transcription	HSMM	muscle
17	chr16:69810000-69822400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr16:69810000-69839800	Weak transcription	HUVEC	blood vessel
19	chr16:69810200-69822200	Weak transcription	Small Intestine	intestine
20	chr16:69810200-69831000	Weak transcription	NHEK	skin
21	chr16:69810200-69833400	Weak transcription	Dnd41	blood
22	chr16:69810400-69830200	Weak transcription	Colon Smooth Muscle	Colon
23	chr16:69810400-69830200	Weak transcription	A549	lung
24	chr16:69812200-69829400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr16:69813800-69827000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr16:69814600-69827600	Strong transcription	Primary B cells from peripheral blood	blood
27	chr16:69815200-69830000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr16:69815200-69830200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr16:69815200-69833400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr16:69815400-69830200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr16:69816200-69829600	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr16:69817800-69854600	Weak transcription	HMEC	breast
33	chr16:69818600-69830200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr16:69819800-69823800	Strong transcription	Placenta	Placenta
35	chr16:69820200-69822200	Weak transcription	NH-A	brain
36	chr16:69820200-69845000	Weak transcription	K562	blood
37	chr16:69820600-69823800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr16:69820600-69824000	Strong transcription	Thymus	Thymus
39	chr16:69820600-69824400	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr16:69820600-69824600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr16:69820600-69827600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr16:69820600-69827800	Strong transcription	Primary T cells from cord blood	blood
43	chr16:69820600-69830000	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr16:69820800-69822200	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr16:69820800-69822600	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr16:69820800-69822600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr16:69820800-69822800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr16:69820800-69822800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr16:69820800-69822800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr16:69820800-69822800	Strong transcription	Fetal Muscle Leg	muscle

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