Variant report

Variant	rs10852459
Chromosome Location	chr16:69836203-69836204
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10517	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1112183	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12921025	0.96[EUR][1000 genomes]
rs13329844	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs16958997	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs16959059	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs2304526	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs2917667	0.82[CHB][hapmap]
rs2917669	0.82[CHB][hapmap]
rs2917682	0.82[CHB][hapmap]
rs2937125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2965753	0.82[CHB][hapmap]
rs2965755	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2965757	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs2965758	0.95[CHB][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap]
rs3785075	0.81[JPT][hapmap]
rs3826153	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3826154	0.85[CHB][hapmap]
rs4502210	0.86[ASN][1000 genomes]
rs4985530	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4985547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62050042	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs689452	0.86[CHB][hapmap]
rs7184995	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7359387	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs8056707	0.81[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap]
rs9921652	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9924271	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9936464	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs9937018	0.86[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69797600-69853400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:69807200-69852400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:69807200-69852800	Weak transcription	Hela-S3	cervix
4	chr16:69807200-69854800	Weak transcription	Psoas Muscle	Psoas
5	chr16:69810000-69839800	Weak transcription	HUVEC	blood vessel
6	chr16:69817800-69854600	Weak transcription	HMEC	breast
7	chr16:69820200-69845000	Weak transcription	K562	blood
8	chr16:69822400-69854800	Weak transcription	Stomach Mucosa	stomach
9	chr16:69823800-69874800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr16:69824200-69852400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr16:69830000-69839000	Strong transcription	HepG2	liver
12	chr16:69830200-69856600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr16:69830600-69838400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr16:69830600-69857600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr16:69830600-69864200	Weak transcription	Colon Smooth Muscle	Colon
16	chr16:69830600-69867000	Weak transcription	Right Ventricle	heart
17	chr16:69831000-69845000	Weak transcription	Fetal Brain Male	brain
18	chr16:69831000-69845600	Weak transcription	A549	lung
19	chr16:69831000-69852400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr16:69831000-69852400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr16:69831000-69854800	Weak transcription	Aorta	Aorta
22	chr16:69831000-69856400	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr16:69831200-69846200	Strong transcription	Fetal Intestine Small	intestine
24	chr16:69831600-69838800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr16:69832000-69836800	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr16:69832000-69837800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr16:69832000-69838800	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr16:69832400-69837000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr16:69832400-69858400	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr16:69832600-69836400	Strong transcription	Colonic Mucosa	Colon
31	chr16:69832600-69836600	Strong transcription	Lung	lung
32	chr16:69832600-69836800	Strong transcription	Fetal Stomach	stomach
33	chr16:69832600-69837200	Strong transcription	GM12878-XiMat	blood
34	chr16:69832600-69837600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr16:69832600-69837800	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr16:69832600-69838000	Strong transcription	Primary T cells from cord blood	blood
37	chr16:69832600-69838200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr16:69832600-69840000	Strong transcription	Fetal Intestine Large	intestine
39	chr16:69832600-69840400	Strong transcription	Primary B cells from peripheral blood	blood
40	chr16:69832800-69837800	Strong transcription	Thymus	Thymus
41	chr16:69833000-69837800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr16:69833200-69854800	Weak transcription	NH-A	brain
43	chr16:69833400-69836800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr16:69833400-69852400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr16:69833400-69854600	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr16:69833400-69854600	Weak transcription	NHLF	lung
47	chr16:69833600-69845600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr16:69833600-69847800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr16:69833800-69843000	Weak transcription	Esophagus	oesophagus
50	chr16:69833800-69844000	Weak transcription	Pancreas	Pancrea

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