Variant report

Variant	rs3785075
Chromosome Location	chr16:69709027-69709028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10517	0.81[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10852459	0.81[JPT][hapmap]
rs1142105	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12102305	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12921017	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13329844	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13331055	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13331071	0.83[ASN][1000 genomes]
rs13331216	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13335149	0.98[ASN][1000 genomes]
rs13335664	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13338560	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16958965	0.81[CEU][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16958997	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16959059	0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2304526	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28392989	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28473508	0.80[EUR][1000 genomes]
rs2917665	0.85[ASN][1000 genomes]
rs2917667	0.86[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2917669	0.86[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs2917672	0.83[ASN][1000 genomes]
rs2917673	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2917674	0.90[ASN][1000 genomes]
rs2917675	0.86[ASN][1000 genomes]
rs2917676	0.90[ASN][1000 genomes]
rs2917681	1.00[YRI][hapmap]
rs2917682	0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs2917683	0.81[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs2965752	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2965753	0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs2965757	0.83[CHB][hapmap]
rs3826153	0.82[CHB][hapmap]
rs3826154	0.90[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3926183	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4442796	1.00[YRI][hapmap]
rs4985547	0.81[JPT][hapmap]
rs61628167	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6499246	0.83[ASN][1000 genomes]
rs6499249	1.00[YRI][hapmap]
rs689452	0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs689456	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7200420	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7359387	0.80[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9888993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9889219	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9921652	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs9924264	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9924271	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs9924953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9925037	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs9927809	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9934264	0.98[ASN][1000 genomes]
rs9934321	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9934681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9936464	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9937018	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9938717	0.91[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69660400-69709600	Weak transcription	Fetal Brain Male	brain
2	chr16:69667000-69727600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:69670800-69715400	Weak transcription	Aorta	Aorta
4	chr16:69671200-69726400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr16:69681600-69711200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr16:69681600-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:69681600-69725800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr16:69685000-69724800	Weak transcription	Fetal Heart	heart
9	chr16:69688600-69725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr16:69690200-69725800	Weak transcription	Ovary	ovary
11	chr16:69690800-69712400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr16:69691000-69726400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr16:69691400-69712400	Weak transcription	Colonic Mucosa	Colon
14	chr16:69694800-69719200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr16:69694800-69725800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr16:69695800-69709200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr16:69697800-69710800	Weak transcription	Lung	lung
18	chr16:69699000-69711800	Weak transcription	Esophagus	oesophagus
19	chr16:69700400-69725400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr16:69701400-69717400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr16:69701400-69725600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr16:69701800-69739200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr16:69702200-69716800	Strong transcription	HSMM	muscle
24	chr16:69703200-69711800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr16:69703200-69713200	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr16:69703400-69710400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr16:69703400-69717600	Weak transcription	Pancreas	Pancrea
28	chr16:69704000-69712400	Weak transcription	Brain Anterior Caudate	brain
29	chr16:69704000-69725400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr16:69704600-69737800	Strong transcription	Liver	Liver
31	chr16:69705600-69709600	Weak transcription	Fetal Stomach	stomach
32	chr16:69705800-69709600	Weak transcription	HUVEC	blood vessel
33	chr16:69705800-69711800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr16:69705800-69711800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr16:69705800-69712000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr16:69705800-69725800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr16:69705800-69725800	Weak transcription	Gastric	stomach
38	chr16:69705800-69725800	Weak transcription	Small Intestine	intestine
39	chr16:69705800-69726000	Weak transcription	Psoas Muscle	Psoas
40	chr16:69706000-69711200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr16:69706000-69711800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr16:69706000-69712200	Weak transcription	Thymus	Thymus
43	chr16:69706000-69712400	Weak transcription	Spleen	Spleen
44	chr16:69706000-69714400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr16:69706000-69725000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr16:69706000-69726200	Weak transcription	Stomach Mucosa	stomach
47	chr16:69706200-69709200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr16:69706200-69709200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr16:69706200-69709200	Weak transcription	HSMMtube	muscle
50	chr16:69706200-69709400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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