Variant report

Variant	rs9927809
Chromosome Location	chr16:69662006-69662007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:69654579..69657827-chr16:69659154..69662325,3	MCF-7	breast:
2	chr16:69660423..69662352-chr16:69665460..69668239,3	MCF-7	breast:
3	chr16:69661739..69663808-chr16:69668595..69670780,2	MCF-7	breast:
4	chr16:69661329..69663803-chr16:69664795..69667678,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10517	0.92[ASN][1000 genomes]
rs1142105	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12102305	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12921017	0.92[ASN][1000 genomes]
rs13329844	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13331055	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13331071	0.86[ASN][1000 genomes]
rs13331216	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13335149	0.89[ASN][1000 genomes]
rs13335664	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13338560	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16958965	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16958997	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16959059	0.95[ASN][1000 genomes]
rs2304526	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28392989	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28473508	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2917665	0.89[ASN][1000 genomes]
rs2917667	0.87[ASN][1000 genomes]
rs2917669	0.92[ASN][1000 genomes]
rs2917672	0.87[ASN][1000 genomes]
rs2917673	0.93[ASN][1000 genomes]
rs2917674	0.93[ASN][1000 genomes]
rs2917675	0.90[ASN][1000 genomes]
rs2917676	0.93[ASN][1000 genomes]
rs2917682	0.89[ASN][1000 genomes]
rs2917683	0.89[ASN][1000 genomes]
rs2965752	0.92[ASN][1000 genomes]
rs2965757	0.82[ASN][1000 genomes]
rs3785075	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3826154	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3926183	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61628167	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6499246	0.87[ASN][1000 genomes]
rs689452	0.93[ASN][1000 genomes]
rs689456	0.92[ASN][1000 genomes]
rs7200420	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7359387	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9888993	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9889219	0.88[ASN][1000 genomes]
rs9921652	0.87[ASN][1000 genomes]
rs9924264	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9924271	0.88[ASN][1000 genomes]
rs9924953	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9925037	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9934264	0.89[ASN][1000 genomes]
rs9934321	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9934681	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9936464	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9937018	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69605400-69663200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr16:69624200-69669600	Weak transcription	Ovary	ovary
3	chr16:69639400-69663400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr16:69644800-69666600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr16:69645000-69669600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr16:69645400-69669800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr16:69645800-69669600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr16:69645800-69681000	Weak transcription	Fetal Brain Female	brain
9	chr16:69647200-69669000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr16:69647600-69670200	Weak transcription	Fetal Kidney	kidney
11	chr16:69647600-69705000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr16:69647800-69663400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr16:69647800-69669200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr16:69647800-69669200	Weak transcription	Adipose Nuclei	Adipose
15	chr16:69648000-69669200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr16:69648000-69669600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr16:69648400-69668400	Weak transcription	HMEC	breast
18	chr16:69648800-69668400	Weak transcription	Dnd41	blood
19	chr16:69650200-69670000	Weak transcription	Pancreas	Pancrea
20	chr16:69650200-69670200	Weak transcription	Gastric	stomach
21	chr16:69650200-69670200	Weak transcription	Spleen	Spleen
22	chr16:69650400-69663400	Weak transcription	Lung	lung
23	chr16:69650400-69669200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr16:69650600-69663200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr16:69650600-69663200	Weak transcription	Fetal Intestine Large	intestine
26	chr16:69650600-69663600	Weak transcription	Aorta	Aorta
27	chr16:69650600-69670000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr16:69650800-69663200	Weak transcription	Primary T cells from cord blood	blood
29	chr16:69651600-69662600	Weak transcription	Fetal Stomach	stomach
30	chr16:69652000-69664000	Weak transcription	Left Ventricle	heart
31	chr16:69653000-69668800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr16:69653600-69669400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr16:69653600-69669800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr16:69653600-69670000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr16:69653600-69680800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr16:69653600-69689600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr16:69653800-69664000	Weak transcription	Fetal Lung	lung
38	chr16:69653800-69669200	Weak transcription	Fetal Muscle Leg	muscle
39	chr16:69653800-69670000	Weak transcription	Right Ventricle	heart
40	chr16:69653800-69670000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr16:69653800-69670000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr16:69653800-69670200	Weak transcription	Brain Germinal Matrix	brain
43	chr16:69654000-69667400	Weak transcription	Colon Smooth Muscle	Colon
44	chr16:69654200-69662800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr16:69654200-69663200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr16:69654200-69663200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr16:69654200-69669800	Weak transcription	Brain Anterior Caudate	brain
48	chr16:69654200-69670000	Weak transcription	Brain Hippocampus Middle	brain
49	chr16:69654200-69670200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr16:69654200-69703600	Weak transcription	Brain Angular Gyrus	brain

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