Variant report

Variant	rs9936464
Chromosome Location	chr16:69644049-69644050
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:69643270..69644771-chr16:69645138..69647942,2	K562	blood:
2	chr16:69643797..69645480-chr16:69747465..69749100,2	K562	blood:
3	chr16:69599839..69601590-chr16:69643874..69645581,2	K562	blood:

Variant related genes	Relation type
ENSG00000102908	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10517	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs10852459	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1142105	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12102305	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12921017	0.87[ASN][1000 genomes]
rs13329844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13331055	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13331071	0.80[ASN][1000 genomes]
rs13331216	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13335149	0.83[ASN][1000 genomes]
rs13335277	0.84[EUR][1000 genomes]
rs13335317	0.84[EUR][1000 genomes]
rs13335664	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13338560	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16958965	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16958997	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16959059	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2304526	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28392989	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28473508	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28637633	0.83[EUR][1000 genomes]
rs2917665	0.83[ASN][1000 genomes]
rs2917667	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs2917669	0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.86[ASN][1000 genomes]
rs2917672	0.81[ASN][1000 genomes]
rs2917673	0.87[ASN][1000 genomes]
rs2917674	0.87[ASN][1000 genomes]
rs2917675	0.84[ASN][1000 genomes]
rs2917676	0.87[ASN][1000 genomes]
rs2917681	1.00[YRI][hapmap]
rs2917682	0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs2917683	0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs2965752	0.86[ASN][1000 genomes]
rs2965753	0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2965757	0.90[CHB][hapmap]
rs3785075	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3826153	0.90[CHB][hapmap];0.90[CHD][hapmap];0.83[JPT][hapmap]
rs3826154	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3926183	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4247109	0.84[CHD][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap]
rs4442796	0.82[CHD][hapmap];0.88[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs4985527	0.82[CHD][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap]
rs4985547	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs61628167	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6499246	0.81[ASN][1000 genomes]
rs6499249	0.84[CHD][hapmap];0.88[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs689452	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs689456	0.86[ASN][1000 genomes]
rs7200420	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7359387	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9888993	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9889219	0.86[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs9921652	0.90[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs9924264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9924271	0.90[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs9924953	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9925037	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9927809	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9934264	0.83[ASN][1000 genomes]
rs9934321	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9934681	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9937018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9938717	0.91[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9936464	NRN1L	cis	cerebellum	SCAN
rs9936464	ATP6V0D1	cis	cerebellum	SCAN

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69602200-69646600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr16:69602200-69653600	Weak transcription	Fetal Thymus	thymus
3	chr16:69603000-69647400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr16:69603600-69660000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr16:69605400-69663200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr16:69605600-69660600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr16:69611200-69645600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr16:69614000-69644400	Weak transcription	Adipose Nuclei	Adipose
9	chr16:69617600-69653400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr16:69617800-69646600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr16:69619800-69644800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr16:69622200-69645400	Weak transcription	Spleen	Spleen
13	chr16:69622600-69644400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr16:69623800-69646800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr16:69624000-69646800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr16:69624200-69669600	Weak transcription	Ovary	ovary
17	chr16:69627000-69645400	Weak transcription	Placenta	Placenta
18	chr16:69627600-69648000	Weak transcription	Lung	lung
19	chr16:69629200-69660000	Weak transcription	Primary B cells from cord blood	blood
20	chr16:69629400-69646600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr16:69629400-69648000	Weak transcription	Esophagus	oesophagus
22	chr16:69629400-69648000	Weak transcription	Right Atrium	heart
23	chr16:69629600-69647200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr16:69629800-69644600	Weak transcription	HSMMtube	muscle
25	chr16:69629800-69645400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr16:69630000-69646800	Weak transcription	Primary T cells from cord blood	blood
27	chr16:69630000-69652000	Weak transcription	HUVEC	blood vessel
28	chr16:69630200-69644400	Weak transcription	HMEC	breast
29	chr16:69630200-69646600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr16:69630200-69646800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr16:69631000-69644800	Weak transcription	Psoas Muscle	Psoas
32	chr16:69631200-69646400	Weak transcription	Fetal Intestine Large	intestine
33	chr16:69631200-69647000	Weak transcription	Liver	Liver
34	chr16:69632800-69645200	Weak transcription	Brain Anterior Caudate	brain
35	chr16:69632800-69645400	Weak transcription	Right Ventricle	heart
36	chr16:69633400-69646400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr16:69633600-69646800	Weak transcription	Brain Hippocampus Middle	brain
38	chr16:69633800-69645600	Weak transcription	K562	blood
39	chr16:69633800-69653000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr16:69634200-69644600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr16:69634400-69644200	Weak transcription	A549	lung
42	chr16:69634600-69646400	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr16:69634600-69646400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr16:69634600-69646800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr16:69634600-69647000	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr16:69635600-69645400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr16:69637400-69644200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr16:69638200-69647000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr16:69638600-69644800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr16:69639200-69644600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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