Variant report

Variant	rs12102305
Chromosome Location	chr16:69615812-69615813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69597897..69602848-chr16:69610469..69616831,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102908	Chromatin interaction
ENSG00000223109	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10517	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1142105	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12921017	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13329844	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13331055	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13331216	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13335277	0.82[EUR][1000 genomes]
rs13335317	0.82[EUR][1000 genomes]
rs13335664	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13338560	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16958965	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16958997	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16959059	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2304526	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28392989	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28473508	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28637633	0.85[EUR][1000 genomes]
rs2917665	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2917667	0.80[AMR][1000 genomes]
rs2917669	0.83[ASN][1000 genomes]
rs2917673	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2917674	0.83[ASN][1000 genomes]
rs2917675	0.81[ASN][1000 genomes]
rs2917676	0.83[ASN][1000 genomes]
rs2917682	0.80[ASN][1000 genomes]
rs2917683	0.80[ASN][1000 genomes]
rs2965752	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3785075	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3826154	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3926183	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61628167	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs689452	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs689456	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7200420	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7359387	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9888993	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9924264	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9924271	0.81[ASN][1000 genomes]
rs9924953	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9925037	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9927809	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9934321	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9934681	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9936464	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9937018	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9938717	0.83[EUR][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69602000-69633000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr16:69602200-69619400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr16:69602200-69622000	Weak transcription	Gastric	stomach
4	chr16:69602200-69627000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr16:69602200-69628600	Weak transcription	Right Atrium	heart
6	chr16:69602200-69631600	Weak transcription	Pancreas	Pancrea
7	chr16:69602200-69643200	Weak transcription	Fetal Muscle Leg	muscle
8	chr16:69602200-69646600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr16:69602200-69653600	Weak transcription	Fetal Thymus	thymus
10	chr16:69602600-69628600	Weak transcription	Thymus	Thymus
11	chr16:69602600-69628800	Weak transcription	Right Ventricle	heart
12	chr16:69602600-69629600	Weak transcription	HSMMtube	muscle
13	chr16:69602600-69630200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr16:69602600-69630800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr16:69602800-69627800	Weak transcription	Fetal Kidney	kidney
16	chr16:69602800-69629200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr16:69603000-69617400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr16:69603000-69627800	Weak transcription	Brain Substantia Nigra	brain
19	chr16:69603000-69647400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr16:69603200-69627800	Weak transcription	Primary B cells from cord blood	blood
21	chr16:69603200-69629600	Weak transcription	NH-A	brain
22	chr16:69603400-69617200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr16:69603400-69623600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr16:69603600-69619400	Weak transcription	K562	blood
25	chr16:69603600-69625200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr16:69603600-69627000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr16:69603600-69629200	Weak transcription	HUVEC	blood vessel
28	chr16:69603600-69660000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr16:69604000-69616400	Weak transcription	Hela-S3	cervix
30	chr16:69604000-69620000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr16:69604000-69627800	Weak transcription	Fetal Lung	lung
32	chr16:69604000-69628000	Weak transcription	Primary T cells from cord blood	blood
33	chr16:69604000-69629000	Weak transcription	NHLF	lung
34	chr16:69604400-69619200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr16:69605200-69616400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr16:69605400-69619400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr16:69605400-69629200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr16:69605400-69663200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr16:69605600-69660600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr16:69609000-69617200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr16:69609600-69627400	Weak transcription	Fetal Intestine Large	intestine
42	chr16:69610000-69623400	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr16:69610600-69629200	Weak transcription	Aorta	Aorta
44	chr16:69610800-69618200	Weak transcription	Placenta	Placenta
45	chr16:69610800-69618400	Weak transcription	Lung	lung
46	chr16:69610800-69619600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr16:69610800-69621200	Weak transcription	Ovary	ovary
48	chr16:69610800-69623200	Weak transcription	Psoas Muscle	Psoas
49	chr16:69610800-69628600	Weak transcription	Left Ventricle	heart
50	chr16:69610800-69630800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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