Variant report

Variant	rs7200420
Chromosome Location	chr16:69701931-69701932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69692273..69694392-chr16:69701620..69704312,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10517	0.94[ASN][1000 genomes]
rs1142105	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12102305	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12921017	0.94[ASN][1000 genomes]
rs13329844	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13331055	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13331071	0.87[ASN][1000 genomes]
rs13331216	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13335149	0.90[ASN][1000 genomes]
rs13335664	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13338560	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16958965	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16958997	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16959059	0.96[ASN][1000 genomes]
rs2304526	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28392989	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28473508	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2917665	0.90[ASN][1000 genomes]
rs2917667	0.88[ASN][1000 genomes]
rs2917669	0.93[ASN][1000 genomes]
rs2917672	0.88[ASN][1000 genomes]
rs2917673	0.95[ASN][1000 genomes]
rs2917674	0.95[ASN][1000 genomes]
rs2917675	0.91[ASN][1000 genomes]
rs2917676	0.95[ASN][1000 genomes]
rs2917682	0.90[ASN][1000 genomes]
rs2917683	0.90[ASN][1000 genomes]
rs2965752	0.93[ASN][1000 genomes]
rs2965757	0.83[ASN][1000 genomes]
rs3785075	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3826154	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3926183	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61628167	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6499246	0.88[ASN][1000 genomes]
rs689452	0.95[ASN][1000 genomes]
rs689456	0.93[ASN][1000 genomes]
rs7359387	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9888993	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9889219	0.89[ASN][1000 genomes]
rs9921652	0.88[ASN][1000 genomes]
rs9924264	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9924271	0.90[ASN][1000 genomes]
rs9924953	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9925037	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9927809	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9934264	0.90[ASN][1000 genomes]
rs9934321	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9934681	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9936464	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9937018	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69647600-69705000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr16:69654200-69703600	Weak transcription	Brain Angular Gyrus	brain
3	chr16:69654200-69705600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr16:69654600-69705000	Weak transcription	Psoas Muscle	Psoas
5	chr16:69660400-69709600	Weak transcription	Fetal Brain Male	brain
6	chr16:69667000-69727600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr16:69670800-69715400	Weak transcription	Aorta	Aorta
8	chr16:69671200-69726400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr16:69678800-69705600	Weak transcription	Stomach Mucosa	stomach
10	chr16:69681400-69705200	Weak transcription	Small Intestine	intestine
11	chr16:69681600-69703000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr16:69681600-69705400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr16:69681600-69709000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr16:69681600-69711200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr16:69681600-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr16:69681600-69725800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr16:69685000-69724800	Weak transcription	Fetal Heart	heart
18	chr16:69688600-69704600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr16:69688600-69725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr16:69688800-69703400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr16:69689800-69705200	Weak transcription	Brain Germinal Matrix	brain
22	chr16:69690000-69705600	Weak transcription	Fetal Brain Female	brain
23	chr16:69690200-69703000	Weak transcription	Pancreas	Pancrea
24	chr16:69690200-69705400	Weak transcription	Gastric	stomach
25	chr16:69690200-69725800	Weak transcription	Ovary	ovary
26	chr16:69690400-69705600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr16:69690600-69705400	Weak transcription	Spleen	Spleen
28	chr16:69690800-69703200	Weak transcription	Brain Anterior Caudate	brain
29	chr16:69690800-69704600	Weak transcription	Right Ventricle	heart
30	chr16:69690800-69712400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr16:69691000-69726400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr16:69691200-69703000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr16:69691200-69706600	Weak transcription	Colon Smooth Muscle	Colon
34	chr16:69691400-69712400	Weak transcription	Colonic Mucosa	Colon
35	chr16:69693000-69702800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr16:69694200-69704600	Weak transcription	NHLF	lung
37	chr16:69694400-69702600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr16:69694400-69704600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr16:69694600-69704600	Weak transcription	Thymus	Thymus
40	chr16:69694600-69705200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr16:69694600-69705600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr16:69694800-69702400	Weak transcription	Fetal Kidney	kidney
43	chr16:69694800-69719200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr16:69694800-69725800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr16:69695000-69705600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr16:69695200-69702000	Weak transcription	Adipose Nuclei	Adipose
47	chr16:69695200-69702800	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr16:69695200-69702800	Weak transcription	HMEC	breast
49	chr16:69695200-69704600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr16:69695200-69704600	Weak transcription	Brain Hippocampus Middle	brain

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