Variant report

Variant	rs2917676
Chromosome Location	chr16:69752916-69752917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:69744834..69746849-chr16:69751166..69754416,4	MCF-7	breast:
2	chr16:69751147..69753338-chr16:69753585..69756622,3	K562	blood:
3	chr16:69751147..69753902-chr16:69755122..69757880,2	K562	blood:
4	chr16:69749611..69753867-chr16:69754025..69757950,6	MCF-7	breast:
5	chr16:69738931..69740863-chr16:69751048..69753277,2	K562	blood:
6	chr16:69751414..69753641-chr16:69775768..69778524,2	K562	blood:
7	chr16:69746030..69749754-chr16:69749797..69753294,3	K562	blood:
8	chr16:69751521..69754036-chr16:69758425..69760528,3	K562	blood:
9	chr16:69751124..69753690-chr16:69787246..69790211,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000141101	Chromatin interaction
ENSG00000181019	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10517	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11075736	0.86[EUR][1000 genomes]
rs1142105	0.90[ASN][1000 genomes]
rs12102305	0.83[ASN][1000 genomes]
rs12921017	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13329844	0.95[ASN][1000 genomes]
rs13331055	0.86[ASN][1000 genomes]
rs13331071	0.85[ASN][1000 genomes]
rs13331216	0.89[ASN][1000 genomes]
rs13335149	0.88[ASN][1000 genomes]
rs13335664	0.90[ASN][1000 genomes]
rs16958965	0.84[ASN][1000 genomes]
rs16958997	0.92[ASN][1000 genomes]
rs16959059	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2304526	0.95[ASN][1000 genomes]
rs28392989	0.84[ASN][1000 genomes]
rs28473508	0.82[ASN][1000 genomes]
rs2917665	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2917667	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2917669	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2917672	0.92[ASN][1000 genomes]
rs2917673	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2917674	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2917675	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2917682	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2917683	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2965752	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2965757	0.84[ASN][1000 genomes]
rs3785075	0.90[ASN][1000 genomes]
rs3826154	0.96[ASN][1000 genomes]
rs3926183	0.82[ASN][1000 genomes]
rs4247109	0.88[EUR][1000 genomes]
rs61628167	0.84[ASN][1000 genomes]
rs6499246	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs689452	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689456	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7200420	0.95[ASN][1000 genomes]
rs7204615	0.83[EUR][1000 genomes]
rs7359387	0.98[ASN][1000 genomes]
rs8057938	0.86[EUR][1000 genomes]
rs9888993	0.90[ASN][1000 genomes]
rs9889219	0.90[ASN][1000 genomes]
rs9921652	0.83[ASN][1000 genomes]
rs9924264	0.87[ASN][1000 genomes]
rs9924271	0.84[ASN][1000 genomes]
rs9924953	0.88[ASN][1000 genomes]
rs9927809	0.93[ASN][1000 genomes]
rs9934264	0.88[ASN][1000 genomes]
rs9934321	0.93[ASN][1000 genomes]
rs9934681	0.89[ASN][1000 genomes]
rs9936464	0.87[ASN][1000 genomes]
rs9937018	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	esv3396845	chr16:69721905-69770627	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv517207	chr16:69745145-69771914	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv524364	chr16:69745145-69803443	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69709400-69755400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:69726000-69755800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:69726600-69759800	Weak transcription	Psoas Muscle	Psoas
4	chr16:69728200-69758600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr16:69728400-69759200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:69729400-69760000	Weak transcription	Brain Germinal Matrix	brain
7	chr16:69729400-69760000	Weak transcription	Ovary	ovary
8	chr16:69730000-69759000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr16:69730600-69759800	Weak transcription	Fetal Brain Female	brain
10	chr16:69730800-69759800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr16:69731800-69759600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr16:69731800-69759800	Weak transcription	Primary B cells from cord blood	blood
13	chr16:69731800-69759800	Weak transcription	Right Ventricle	heart
14	chr16:69733800-69759800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr16:69736000-69758600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr16:69737200-69758800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr16:69738800-69759800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr16:69739200-69759800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr16:69740800-69758800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr16:69741000-69759200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr16:69741000-69759400	Weak transcription	Small Intestine	intestine
22	chr16:69741400-69756600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr16:69741600-69753400	Strong transcription	HUVEC	blood vessel
24	chr16:69741600-69759800	Weak transcription	Primary T cells from cord blood	blood
25	chr16:69743800-69755600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr16:69743800-69758800	Weak transcription	Dnd41	blood
27	chr16:69743800-69760000	Weak transcription	Fetal Kidney	kidney
28	chr16:69744000-69759800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr16:69745400-69755400	Weak transcription	K562	blood
30	chr16:69745400-69759800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr16:69745600-69757800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr16:69745800-69758400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr16:69746400-69756800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr16:69746600-69755800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr16:69746600-69758800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr16:69746800-69754200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr16:69746800-69755800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr16:69747000-69759000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr16:69747200-69759600	Weak transcription	Thymus	Thymus
40	chr16:69747400-69757600	Strong transcription	Osteobl	bone
41	chr16:69747400-69759200	Weak transcription	Spleen	Spleen
42	chr16:69747400-69759400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr16:69747400-69759800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr16:69747400-69759800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr16:69747600-69753200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr16:69748000-69756600	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr16:69748600-69754400	Strong transcription	NHDF-Ad	bronchial
48	chr16:69748800-69757800	Strong transcription	HSMM	muscle
49	chr16:69749400-69759000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr16:69749400-69759200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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