Variant report

Variant	rs9924264
Chromosome Location	chr16:69646496-69646497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69643270..69644771-chr16:69645138..69647942,2	K562	blood:
2	chr16:69645838..69648346-chr16:69654090..69655610,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10517	0.86[ASN][1000 genomes]
rs1142105	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12102305	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12921017	0.86[ASN][1000 genomes]
rs13329844	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13331055	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13331216	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13335149	0.84[ASN][1000 genomes]
rs13335277	0.84[EUR][1000 genomes]
rs13335317	0.84[EUR][1000 genomes]
rs13335664	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13338560	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16958965	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16958997	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16959059	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2304526	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28392989	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28473508	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28637633	0.83[EUR][1000 genomes]
rs2917665	0.82[ASN][1000 genomes]
rs2917667	0.80[ASN][1000 genomes]
rs2917669	0.85[ASN][1000 genomes]
rs2917672	0.80[ASN][1000 genomes]
rs2917673	0.87[ASN][1000 genomes]
rs2917674	0.87[ASN][1000 genomes]
rs2917675	0.83[ASN][1000 genomes]
rs2917676	0.87[ASN][1000 genomes]
rs2917682	0.82[ASN][1000 genomes]
rs2917683	0.82[ASN][1000 genomes]
rs2965752	0.85[ASN][1000 genomes]
rs3785075	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3826154	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3926183	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61628167	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6499246	0.80[ASN][1000 genomes]
rs689452	0.87[ASN][1000 genomes]
rs689456	0.85[ASN][1000 genomes]
rs7200420	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7359387	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9888993	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9889219	0.83[ASN][1000 genomes]
rs9921652	0.80[ASN][1000 genomes]
rs9924271	0.81[ASN][1000 genomes]
rs9924953	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9925037	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9927809	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9934264	0.84[ASN][1000 genomes]
rs9934321	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9934681	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9936464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9937018	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9938717	0.81[EUR][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69602200-69646600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr16:69602200-69653600	Weak transcription	Fetal Thymus	thymus
3	chr16:69603000-69647400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr16:69603600-69660000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr16:69605400-69663200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr16:69605600-69660600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr16:69617600-69653400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr16:69617800-69646600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr16:69623800-69646800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr16:69624000-69646800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr16:69624200-69669600	Weak transcription	Ovary	ovary
12	chr16:69627600-69648000	Weak transcription	Lung	lung
13	chr16:69629200-69660000	Weak transcription	Primary B cells from cord blood	blood
14	chr16:69629400-69646600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr16:69629400-69648000	Weak transcription	Esophagus	oesophagus
16	chr16:69629400-69648000	Weak transcription	Right Atrium	heart
17	chr16:69629600-69647200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr16:69630000-69646800	Weak transcription	Primary T cells from cord blood	blood
19	chr16:69630000-69652000	Weak transcription	HUVEC	blood vessel
20	chr16:69630200-69646600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr16:69630200-69646800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr16:69631200-69647000	Weak transcription	Liver	Liver
23	chr16:69633600-69646800	Weak transcription	Brain Hippocampus Middle	brain
24	chr16:69633800-69653000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr16:69634600-69646800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr16:69634600-69647000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr16:69638200-69647000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr16:69639400-69663400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr16:69640800-69646600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr16:69640800-69647000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr16:69640800-69649800	Weak transcription	Pancreas	Pancrea
32	chr16:69642000-69646800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr16:69642200-69646800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr16:69642800-69646600	Weak transcription	Fetal Intestine Small	intestine
35	chr16:69642800-69649200	Weak transcription	Fetal Stomach	stomach
36	chr16:69643400-69647200	Weak transcription	HSMM	muscle
37	chr16:69643400-69647400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr16:69643400-69652200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr16:69643600-69648600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr16:69643600-69650400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr16:69643800-69646600	Enhancers	NHEK	skin
42	chr16:69643800-69647200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr16:69643800-69647800	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr16:69643800-69648200	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr16:69644000-69647000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr16:69644000-69657200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr16:69644200-69647000	Enhancers	A549	lung
48	chr16:69644200-69648400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr16:69644400-69646600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr16:69644400-69647000	Enhancers	HMEC	breast

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