Variant report

Variant	rs28637633
Chromosome Location	chr16:69573153-69573154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69563250..69565350-chr16:69571620..69573342,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12102305	0.85[EUR][1000 genomes]
rs13329844	0.82[EUR][1000 genomes]
rs13335277	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13335317	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13338560	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16958965	0.85[EUR][1000 genomes]
rs16958997	0.83[EUR][1000 genomes]
rs2304526	0.81[EUR][1000 genomes]
rs28392989	0.83[EUR][1000 genomes]
rs28473508	0.87[EUR][1000 genomes]
rs3926183	0.83[EUR][1000 genomes]
rs61628167	0.85[EUR][1000 genomes]
rs9924264	0.83[EUR][1000 genomes]
rs9925037	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9934321	0.82[EUR][1000 genomes]
rs9936464	0.83[EUR][1000 genomes]
rs9938717	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431514	chr16:69428599-69581699	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv906821	chr16:69509506-69576894	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1852	chr16:69566121-69610962	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69569800-69573200	Weak transcription	A549	lung
2	chr16:69569800-69573200	Weak transcription	HSMM	muscle
3	chr16:69569800-69576800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr16:69569800-69576800	Weak transcription	NHLF	lung
5	chr16:69569800-69579800	Weak transcription	Placenta	Placenta
6	chr16:69570000-69573400	Weak transcription	NHEK	skin
7	chr16:69570000-69577000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr16:69570800-69574000	Enhancers	NHDF-Ad	bronchial
9	chr16:69571400-69575400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr16:69571600-69573800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr16:69571800-69574000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr16:69571800-69574000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr16:69572600-69574000	Enhancers	Osteobl	bone
14	chr16:69572600-69574600	Enhancers	Hela-S3	cervix
15	chr16:69572600-69575800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr16:69572800-69573400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr16:69573000-69573200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr16:69573000-69573600	Enhancers	HSMMtube	muscle
19	chr16:69573000-69573800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr16:69573000-69574000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr16:69573000-69574000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr16:69573000-69574200	Enhancers	HMEC	breast
23	chr16:69573000-69574400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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