Variant report

Variant	rs12927495
Chromosome Location	chr16:58855838-58855839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11076263	0.85[EUR][1000 genomes]
rs11646756	0.85[EUR][1000 genomes]
rs11866352	0.88[EUR][1000 genomes]
rs12325054	0.82[EUR][1000 genomes]
rs12325510	0.80[EUR][1000 genomes]
rs12596434	0.87[EUR][1000 genomes]
rs12598527	0.85[EUR][1000 genomes]
rs12600201	0.85[EUR][1000 genomes]
rs12600206	0.85[EUR][1000 genomes]
rs12928733	0.87[EUR][1000 genomes]
rs12935488	0.84[EUR][1000 genomes]
rs1364346	0.83[EUR][1000 genomes]
rs1615326	0.81[EUR][1000 genomes]
rs1627257	0.84[EUR][1000 genomes]
rs1628029	0.84[EUR][1000 genomes]
rs1646262	0.84[EUR][1000 genomes]
rs1646270	0.80[EUR][1000 genomes]
rs1646273	0.81[EUR][1000 genomes]
rs1646276	0.81[EUR][1000 genomes]
rs1646277	0.82[EUR][1000 genomes]
rs1646283	0.83[EUR][1000 genomes]
rs1646289	0.83[EUR][1000 genomes]
rs1646290	0.83[EUR][1000 genomes]
rs1657165	0.81[EUR][1000 genomes]
rs1657168	0.81[EUR][1000 genomes]
rs1657175	0.83[EUR][1000 genomes]
rs257623	0.84[EUR][1000 genomes]
rs257625	0.84[EUR][1000 genomes]
rs257626	0.84[EUR][1000 genomes]
rs36098613	0.89[EUR][1000 genomes]
rs4784987	0.94[EUR][1000 genomes]
rs62064940	0.88[EUR][1000 genomes]
rs62066381	0.88[EUR][1000 genomes]
rs62066382	0.84[EUR][1000 genomes]
rs62066815	0.83[EUR][1000 genomes]
rs62066843	0.84[EUR][1000 genomes]
rs6416775	0.94[EUR][1000 genomes]
rs7185513	0.88[EUR][1000 genomes]
rs8049572	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758427	chr16:58579005-58876037	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2758650	chr16:58579005-58876037	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1065269	chr16:58743487-58972224	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:58855200-58856000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr16:58855600-58856000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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