Variant report

Variant	rs8049572
Chromosome Location	chr16:58843576-58843577
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11076263	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11076270	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11643969	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11646756	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12325054	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12325510	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12595974	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12596434	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12598527	0.89[CEU][hapmap];0.80[JPT][hapmap];0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12599931	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12600201	0.88[CEU][hapmap];0.84[JPT][hapmap];0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12600206	0.88[CEU][hapmap];0.84[JPT][hapmap];0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12709013	0.85[EUR][1000 genomes]
rs12926993	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12927495	0.89[EUR][1000 genomes]
rs12928733	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12930298	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12935488	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1364346	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1615326	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1616798	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs1627257	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1628029	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1646262	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1646270	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1646273	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1646276	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1646277	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1646283	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1646289	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1646290	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1657162	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1657165	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1657168	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1657175	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1657179	0.84[CEU][hapmap]
rs257623	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs257625	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs257626	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36098613	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4784987	0.84[EUR][1000 genomes]
rs62064940	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62066381	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62066382	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62066815	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62066843	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6416775	0.85[EUR][1000 genomes]
rs6499983	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7185513	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8046667	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8046998	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8054482	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs863944	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758427	chr16:58579005-58876037	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2758650	chr16:58579005-58876037	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1065269	chr16:58743487-58972224	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:58841400-58844400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr16:58842200-58843600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr16:58842600-58843600	Enhancers	NHEK	skin

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