Variant report

Variant	rs6499983
Chromosome Location	chr16:58843909-58843910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11076263	0.81[EUR][1000 genomes]
rs11076270	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11643969	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11646756	0.81[EUR][1000 genomes]
rs12596434	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12598527	0.81[EUR][1000 genomes]
rs12599931	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12600201	0.81[EUR][1000 genomes]
rs12600206	0.81[EUR][1000 genomes]
rs12709013	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12926993	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12928733	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12930298	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12935488	0.81[EUR][1000 genomes]
rs1627257	0.81[EUR][1000 genomes]
rs1628029	0.80[EUR][1000 genomes]
rs1646262	0.81[EUR][1000 genomes]
rs257623	0.81[EUR][1000 genomes]
rs257625	0.81[EUR][1000 genomes]
rs257626	0.81[EUR][1000 genomes]
rs36098613	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62064940	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62066381	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62066382	0.81[AMR][1000 genomes]
rs62066843	0.81[EUR][1000 genomes]
rs7185513	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8046667	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8046998	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8049572	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8054482	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758427	chr16:58579005-58876037	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2758650	chr16:58579005-58876037	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1065269	chr16:58743487-58972224	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:58841400-58844400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr16:58843600-58847800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr16:58843600-58848400	Weak transcription	NHEK	skin

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