Variant report

Variant	rs12929335
Chromosome Location	chr16:71435752-71435753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12445377	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12445403	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12923309	0.90[EUR][1000 genomes]
rs12934168	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12934739	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16972663	0.81[EUR][1000 genomes]
rs2018713	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34538886	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35326792	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35331976	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35885273	0.92[EUR][1000 genomes]
rs7188475	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7189545	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8054221	0.81[EUR][1000 genomes]
rs8060176	0.82[EUR][1000 genomes]
rs891125	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs891131	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71424200-71436000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:71434400-71436400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr16:71434400-71436400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr16:71434400-71436800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr16:71434800-71435800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr16:71434800-71436600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr16:71434800-71446600	Weak transcription	Right Atrium	heart
8	chr16:71435000-71436000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr16:71435000-71436000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr16:71435400-71436800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr16:71435600-71436200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr16:71435600-71436400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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