Variant report

Variant	rs891131
Chromosome Location	chr16:71432417-71432418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12445377	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12445403	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12923309	0.83[EUR][1000 genomes]
rs12929335	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12934168	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12934739	0.82[EUR][1000 genomes]
rs2018713	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34538886	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35326792	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35331976	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35885273	0.85[EUR][1000 genomes]
rs7189545	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs891125	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv977997	chr16:71431497-71433168	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71424200-71436000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:71432400-71432600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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