Variant report

Variant	rs12943633
Chromosome Location	chr17:37970365-37970366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37924784..37926375-chr17:37969681..37972585,2	MCF-7	breast:
2	chr17:37964384..37967341-chr17:37969049..37971628,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12937330	1.00[ASW][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs12942660	0.96[YRI][hapmap];0.96[AFR][1000 genomes]
rs13313561	0.92[YRI][hapmap];0.95[AFR][1000 genomes]
rs13380871	0.83[AFR][1000 genomes]
rs1453560	1.00[ASW][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs16965367	0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs2313429	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs28403951	0.91[AFR][1000 genomes]
rs28449671	0.93[AFR][1000 genomes]
rs28842324	0.91[AFR][1000 genomes]
rs2941509	0.91[ASW][hapmap];1.00[TSI][hapmap]
rs34016964	0.88[AFR][1000 genomes]
rs34344462	0.95[AFR][1000 genomes]
rs34599546	0.88[AFR][1000 genomes]
rs34988504	0.96[AFR][1000 genomes]
rs35130019	0.94[AFR][1000 genomes]
rs36097841	0.96[AFR][1000 genomes]
rs4337325	0.95[YRI][hapmap];0.96[AFR][1000 genomes]
rs56928975	0.92[AFR][1000 genomes]
rs67135646	0.93[AFR][1000 genomes]
rs67600807	0.89[AFR][1000 genomes]
rs7211998	0.90[AFR][1000 genomes]
rs7224641	0.88[AFR][1000 genomes]
rs7503018	1.00[ASW][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs8067523	0.98[AFR][1000 genomes]
rs8068894	0.91[AFR][1000 genomes]
rs8069531	0.91[AFR][1000 genomes]
rs8072612	0.88[AFR][1000 genomes]
rs8076347	1.00[ASW][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes]
rs8079075	1.00[TSI][hapmap]
rs9892781	0.96[AFR][1000 genomes]
rs9899006	0.89[AFR][1000 genomes]
rs9899336	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs9899345	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs9900541	0.93[AFR][1000 genomes]
rs9901483	1.00[ASW][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs9905881	0.89[AFR][1000 genomes]
rs9907291	0.89[AFR][1000 genomes]
rs9907966	1.00[TSI][hapmap]
rs9907988	0.94[AFR][1000 genomes]
rs9908694	1.00[ASW][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes]
rs9909365	0.88[AFR][1000 genomes]
rs9911634	1.00[ASW][hapmap];0.96[YRI][hapmap]
rs9911688	1.00[TSI][hapmap]
rs9913044	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs9913769	1.00[TSI][hapmap]
rs9913957	1.00[TSI][hapmap]
rs9914757	0.95[AFR][1000 genomes]
rs9915797	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37966800-37974000	Strong transcription	GM12878-XiMat	blood
2	chr17:37968200-37971400	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr17:37968800-37970600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:37968800-37971000	Enhancers	Dnd41	blood
5	chr17:37969000-37970800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:37969600-37970400	Genic enhancers	Primary B cells from cord blood	blood
7	chr17:37969600-37970400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
8	chr17:37969600-37970400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
9	chr17:37969600-37970400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr17:37969600-37970400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr17:37969600-37970600	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr17:37969600-37970600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr17:37969600-37970800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr17:37969600-37970800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr17:37969800-37970400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr17:37969800-37970400	Flanking Active TSS	Thymus	Thymus
17	chr17:37969800-37970600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr17:37969800-37970600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
19	chr17:37970000-37970400	Flanking Active TSS	Fetal Thymus	thymus
20	chr17:37970200-37970400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr17:37970200-37970400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr17:37970200-37970400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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