Variant report

Variant	rs34016964
Chromosome Location	chr17:37938977-37938978
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr17:37938571-37939253	HCT-116	colon:	n/a	n/a
2	GATA2	chr17:37938526-37939116	HUVEC	blood vessel:	n/a	n/a
3	TBL1XR1	chr17:37938746-37938977	K562	blood:	n/a	n/a
4	CEBPB	chr17:37938861-37939045	IMR90	lung:	n/a	n/a
5	FOS	chr17:37938698-37939079	HUVEC	blood vessel:	n/a	n/a
6	SMC3	chr17:37938961-37938984	Hela-S3	cervix:	n/a	n/a
7	GABPA	chr17:37938643-37939101	MCF-7	breast:	n/a	n/a
8	CEBPB	chr17:37938679-37939160	HCT-116	colon:	n/a	n/a
9	MYC	chr17:37938467-37939139	NB4	blood:	n/a	n/a
10	GATA3	chr17:37938526-37939069	MCF-7	breast:	n/a	n/a
11	GATA1	chr17:37938578-37939250	PBDE	blood:	n/a	n/a
12	CEBPB	chr17:37938839-37939077	Hela-S3	cervix:	n/a	n/a
13	CEBPB	chr17:37938755-37939135	ECC-1	luminal epithelium:	n/a	n/a
14	GATA3	chr17:37938640-37939110	MCF-7	breast:	n/a	n/a
15	SP1	chr17:37938511-37939232	HCT-116	colon:	n/a	chr17:37938992-37939002
16	CEBPB	chr17:37938903-37938994	HepG2	liver:	n/a	n/a
17	FOS	chr17:37938732-37939050	MCF10A-Er-Src	breast:	n/a	n/a
18	POLR2A	chr17:37938790-37939108	HL-60	blood:	n/a	n/a
19	ATF1	chr17:37938777-37939103	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:37937140..37939112-chr17:37941348..37943043,2	MCF-7	breast:

No data

Variant related genes	Relation type
IKZF3	TF binding region

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs12709364	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12937330	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12938117	1.00[EUR][1000 genomes]
rs12938617	0.96[EUR][1000 genomes]
rs12938749	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12940616	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12942660	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12943633	0.88[AFR][1000 genomes]
rs12945253	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12946040	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12946188	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12946792	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12947480	1.00[EUR][1000 genomes]
rs12952146	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13313561	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13313564	1.00[EUR][1000 genomes]
rs13313573	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13380871	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1453560	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1510475	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16965367	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17676923	0.83[EUR][1000 genomes]
rs2313429	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28392589	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28403951	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28449671	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28535471	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28537796	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28580691	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28621669	1.00[EUR][1000 genomes]
rs28648398	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28661421	1.00[EUR][1000 genomes]
rs28695941	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28723017	1.00[EUR][1000 genomes]
rs28842324	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28880017	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28896477	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2941509	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34053394	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34291217	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34344462	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34485135	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34518282	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34582264	0.88[EUR][1000 genomes]
rs34599546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34640000	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34654193	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34758895	0.92[EUR][1000 genomes]
rs34864615	0.96[EUR][1000 genomes]
rs34925681	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34988504	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35088469	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35105110	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35130019	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35336365	0.86[EUR][1000 genomes]
rs35352075	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35397078	0.88[EUR][1000 genomes]
rs35405174	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35506518	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35938199	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36097841	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4337325	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4622539	1.00[EUR][1000 genomes]
rs56928975	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58075375	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66763967	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67135646	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67571561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67600807	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67605703	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71369788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71369791	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71369792	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7211998	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7217133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7224641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73302152	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73304123	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7503018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8067523	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8068125	1.00[EUR][1000 genomes]
rs8068894	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8069531	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8069893	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8072612	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8076347	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8078409	0.88[EUR][1000 genomes]
rs8079075	1.00[EUR][1000 genomes]
rs9652838	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9652840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9892781	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9894370	0.92[EUR][1000 genomes]
rs9894680	1.00[EUR][1000 genomes]
rs9894898	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9898031	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9898464	1.00[EUR][1000 genomes]
rs9899006	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9899336	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9899345	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9900019	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9900538	1.00[EUR][1000 genomes]
rs9900541	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9901483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9901617	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9901917	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9902621	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9904277	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9904834	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9905881	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9907096	1.00[EUR][1000 genomes]
rs9907291	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9907564	1.00[EUR][1000 genomes]
rs9907794	1.00[EUR][1000 genomes]
rs9907966	1.00[EUR][1000 genomes]
rs9907988	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9908694	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9908983	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9909365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9909432	0.89[EUR][1000 genomes]
rs9911069	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9911634	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9911669	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9911688	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9912095	1.00[EUR][1000 genomes]
rs9913044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9913596	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9913769	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9913795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9913957	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9914302	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9914516	0.83[EUR][1000 genomes]
rs9914665	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9914757	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9915509	1.00[EUR][1000 genomes]
rs9915797	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9916259	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37934600-37939600	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr17:37934600-37939800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:37934600-37940000	Genic enhancers	Primary B cells from peripheral blood	blood
4	chr17:37934600-37940000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr17:37934600-37940000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr17:37934600-37940600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr17:37934800-37939600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr17:37934800-37939600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr17:37935000-37939200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:37935000-37940000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr17:37935200-37939000	Genic enhancers	Fetal Thymus	thymus
12	chr17:37936000-37939200	Genic enhancers	Primary B cells from cord blood	blood
13	chr17:37936000-37940000	Genic enhancers	GM12878-XiMat	blood
14	chr17:37937200-37939000	Enhancers	Thymus	Thymus
15	chr17:37937400-37939000	Enhancers	Duodenum Mucosa	Duodenum
16	chr17:37937600-37939800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr17:37937800-37939000	Genic enhancers	Primary T cells fromperipheralblood	blood
18	chr17:37937800-37939000	Enhancers	Fetal Intestine Small	intestine
19	chr17:37937800-37939600	Enhancers	Placenta Amnion	Placenta Amnion
20	chr17:37938200-37939200	Genic enhancers	Primary T cells from cord blood	blood
21	chr17:37938200-37939800	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr17:37938200-37940000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr17:37938400-37939000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr17:37938400-37939000	Enhancers	Lung	lung
25	chr17:37938400-37939000	Enhancers	Spleen	Spleen
26	chr17:37938400-37939000	Flanking Active TSS	HMEC	breast
27	chr17:37938400-37939200	Enhancers	Fetal Lung	lung
28	chr17:37938400-37939400	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr17:37938400-37939600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr17:37938400-37939800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr17:37938600-37939000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr17:37938600-37939000	Bivalent Enhancer	Hela-S3	cervix
33	chr17:37938600-37939200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr17:37938600-37939400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr17:37938600-37939800	Weak transcription	Placenta	Placenta
36	chr17:37938800-37939000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr17:37938800-37939000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr17:37938800-37939000	Bivalent Enhancer	Fetal Heart	heart
39	chr17:37938800-37939000	Enhancers	NHEK	skin
40	chr17:37938800-37939200	Enhancers	Small Intestine	intestine
41	chr17:37938800-37939200	Bivalent Enhancer	HUVEC	blood vessel
42	chr17:37938800-37939600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr17:37938800-37942400	Weak transcription	Rectal Mucosa Donor 29	rectum

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