Variant report

Variant rs12946188
Chromosome Location chr17:37984430-37984431
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:35 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:37979400-37986600 ZNF genes & repeats GM12878-XiMat blood
2 chr17:37979400-37991800 Weak transcription Gastric stomach
3 chr17:37980200-37986600 Strong transcription Primary T cells from cord blood blood
4 chr17:37980600-37985000 Strong transcription Primary T helper memory cells from peripheral blood 2 blood
5 chr17:37980600-37985800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
6 chr17:37980600-37986400 Strong transcription Primary T killer naive cells fromperipheralblood blood
7 chr17:37980600-37986600 Strong transcription Primary T helper naive cells fromperipheralblood blood
8 chr17:37980800-37985800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr17:37981000-37985000 Strong transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr17:37981000-37987200 Strong transcription Primary T regulatory cells fromperipheralblood blood
11 chr17:37981000-37987400 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr17:37981400-37985400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
13 chr17:37981400-37985800 Strong transcription Fetal Thymus thymus
14 chr17:37981400-37987200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
15 chr17:37981600-37988600 Strong transcription Primary T helper cells fromperipheralblood blood
16 chr17:37981800-37986600 Strong transcription Primary T helper naive cells from peripheral blood blood
17 chr17:37981800-37988000 Strong transcription Primary T cells fromperipheralblood blood
18 chr17:37982000-37987600 Strong transcription Primary T helper cells PMA-I stimulated --
19 chr17:37982200-37985000 Strong transcription Spleen Spleen
20 chr17:37982400-37991000 Strong transcription Primary B cells from peripheral blood blood
21 chr17:37982600-37985800 Strong transcription Thymus Thymus
22 chr17:37982600-37993800 Strong transcription Primary B cells from cord blood blood
23 chr17:37982800-37985600 Strong transcription Primary T killer memory cells from peripheral blood blood
24 chr17:37984000-37984600 Enhancers Liver Liver
25 chr17:37984000-37985000 Strong transcription Rectal Mucosa Donor 29 rectum
26 chr17:37984400-37984800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr17:37984400-37984800 Enhancers Fetal Intestine Large intestine
28 chr17:37984400-37984800 Enhancers Stomach Mucosa stomach
29 chr17:37984400-37984800 Enhancers HMEC breast
30 chr17:37984400-37985000 Enhancers Esophagus oesophagus
31 chr17:37984400-37985000 Enhancers Fetal Intestine Small intestine
32 chr17:37984400-37985000 Enhancers Pancreas Pancrea
33 chr17:37984400-37985000 Bivalent Enhancer A549 lung
34 chr17:37984400-37985000 Flanking Bivalent TSS/Enh HepG2 liver
35 chr17:37984400-37993400 Weak transcription Duodenum Mucosa Duodenum

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