Variant report

Variant	rs9916369
Chromosome Location	chr17:38028266-38028267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38027253..38029353-chr17:38058744..38061451,2	K562	blood:
2	chr17:38022690..38024941-chr17:38027177..38028935,2	K562	blood:
3	chr17:38027089..38030727-chr17:38135584..38137903,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108344	Chromatin interaction
ENSG00000186075	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12938117	0.81[AFR][1000 genomes]
rs12939306	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs12943012	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12943206	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12943472	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs12945253	0.93[YRI][hapmap]
rs12946188	0.93[YRI][hapmap]
rs12947480	0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs12948686	0.88[AFR][1000 genomes]
rs12949178	0.82[AFR][1000 genomes]
rs12950066	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs12950662	0.85[AFR][1000 genomes]
rs12953265	0.82[AFR][1000 genomes]
rs13313564	0.91[YRI][hapmap]
rs13313573	0.86[YRI][hapmap]
rs1377562	0.82[AFR][1000 genomes]
rs1510475	0.86[YRI][hapmap]
rs28392589	0.85[AFR][1000 genomes]
rs28420939	0.90[AFR][1000 genomes]
rs28621669	0.81[AFR][1000 genomes]
rs28651240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28661421	0.81[AFR][1000 genomes]
rs28723017	0.81[AFR][1000 genomes]
rs28896477	0.81[AFR][1000 genomes]
rs34020832	0.82[AFR][1000 genomes]
rs34225322	0.82[AFR][1000 genomes]
rs34523816	0.86[AFR][1000 genomes]
rs34572227	0.83[AFR][1000 genomes]
rs35284336	0.81[AFR][1000 genomes]
rs35336365	0.89[AFR][1000 genomes]
rs35770042	0.81[AFR][1000 genomes]
rs36049276	0.83[AFR][1000 genomes]
rs4622539	0.85[AFR][1000 genomes]
rs66565390	0.81[AFR][1000 genomes]
rs8068125	0.81[AFR][1000 genomes]
rs8071083	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8079075	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs9898031	0.86[YRI][hapmap]
rs9900019	0.93[YRI][hapmap]
rs9900538	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs9904834	0.86[YRI][hapmap]
rs9907096	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs9907564	0.81[AFR][1000 genomes]
rs9907966	0.92[YRI][hapmap]
rs9908983	0.84[YRI][hapmap]
rs9911069	0.86[YRI][hapmap]
rs9911669	0.86[YRI][hapmap]
rs9911688	0.92[YRI][hapmap]
rs9912095	0.81[AFR][1000 genomes]
rs9913769	0.92[YRI][hapmap]
rs9913957	0.92[YRI][hapmap]
rs9914516	0.86[YRI][hapmap]
rs9915509	0.92[YRI][hapmap];0.92[AFR][1000 genomes]
rs9916259	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs9941360	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs9941391	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv1795575	chr17:37974075-38041762	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38026400-38030000	Enhancers	Primary B cells from cord blood	blood
2	chr17:38027000-38028800	Flanking Active TSS	GM12878-XiMat	blood
3	chr17:38027400-38028600	Weak transcription	Primary B cells from peripheral blood	blood

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