Variant report

Variant	rs35336365
Chromosome Location	chr17:38050715-38050716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs12709364	0.86[EUR][1000 genomes]
rs12937330	0.86[EUR][1000 genomes]
rs12938117	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12938617	0.82[EUR][1000 genomes]
rs12938749	0.86[EUR][1000 genomes]
rs12940616	0.86[EUR][1000 genomes]
rs12942660	0.86[EUR][1000 genomes]
rs12943012	0.91[AFR][1000 genomes]
rs12945253	0.86[EUR][1000 genomes]
rs12946040	0.86[EUR][1000 genomes]
rs12946188	0.86[EUR][1000 genomes]
rs12946792	0.86[EUR][1000 genomes]
rs12947480	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12952146	0.86[EUR][1000 genomes]
rs13313561	0.86[EUR][1000 genomes]
rs13313564	0.86[EUR][1000 genomes]
rs13313573	0.86[EUR][1000 genomes]
rs13380871	0.86[EUR][1000 genomes]
rs1453560	0.89[EUR][1000 genomes]
rs1510475	0.86[EUR][1000 genomes]
rs16965367	0.86[EUR][1000 genomes]
rs17676923	0.97[EUR][1000 genomes]
rs2123685	0.93[EUR][1000 genomes]
rs2313429	0.86[EUR][1000 genomes]
rs28392589	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28403951	0.86[EUR][1000 genomes]
rs28449671	0.86[EUR][1000 genomes]
rs28535471	0.86[EUR][1000 genomes]
rs28537796	0.86[EUR][1000 genomes]
rs28580691	0.86[EUR][1000 genomes]
rs28621669	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28648398	0.86[EUR][1000 genomes]
rs28651240	0.89[AFR][1000 genomes]
rs28661421	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28695941	0.86[EUR][1000 genomes]
rs28723017	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28842324	0.86[EUR][1000 genomes]
rs28880017	0.86[EUR][1000 genomes]
rs28896477	0.86[EUR][1000 genomes]
rs2941509	0.86[EUR][1000 genomes]
rs3169572	0.93[EUR][1000 genomes]
rs3169574	0.93[EUR][1000 genomes]
rs34016964	0.86[EUR][1000 genomes]
rs34053394	0.86[EUR][1000 genomes]
rs34291217	0.86[EUR][1000 genomes]
rs34344462	0.86[EUR][1000 genomes]
rs34485135	0.86[EUR][1000 genomes]
rs34518282	0.86[EUR][1000 genomes]
rs34599546	0.86[EUR][1000 genomes]
rs34640000	0.86[EUR][1000 genomes]
rs34654193	0.86[EUR][1000 genomes]
rs34864615	0.82[EUR][1000 genomes]
rs34925681	0.86[EUR][1000 genomes]
rs34988504	0.86[EUR][1000 genomes]
rs35088469	0.86[EUR][1000 genomes]
rs35104165	0.93[EUR][1000 genomes]
rs35105110	0.86[EUR][1000 genomes]
rs35130019	0.82[EUR][1000 genomes]
rs35352075	0.86[EUR][1000 genomes]
rs35405174	0.86[EUR][1000 genomes]
rs35412794	1.00[ASN][1000 genomes]
rs35506518	0.86[EUR][1000 genomes]
rs35770042	0.86[AMR][1000 genomes]
rs35938199	0.86[EUR][1000 genomes]
rs36097841	0.86[EUR][1000 genomes]
rs3859186	0.93[EUR][1000 genomes]
rs4337325	0.86[EUR][1000 genomes]
rs4622539	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56928975	0.82[EUR][1000 genomes]
rs58075375	0.86[EUR][1000 genomes]
rs59246468	1.00[ASN][1000 genomes]
rs66763967	0.86[EUR][1000 genomes]
rs67135646	0.86[EUR][1000 genomes]
rs67571561	0.86[EUR][1000 genomes]
rs67600807	0.86[EUR][1000 genomes]
rs67605703	0.86[EUR][1000 genomes]
rs71369788	0.86[EUR][1000 genomes]
rs71369791	0.86[EUR][1000 genomes]
rs71369792	0.86[EUR][1000 genomes]
rs7211998	0.86[EUR][1000 genomes]
rs7217133	0.86[EUR][1000 genomes]
rs7224641	0.86[EUR][1000 genomes]
rs73302152	0.86[EUR][1000 genomes]
rs73304123	0.86[EUR][1000 genomes]
rs7503018	0.86[EUR][1000 genomes]
rs8067523	0.86[EUR][1000 genomes]
rs8068125	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8068894	0.86[EUR][1000 genomes]
rs8069531	0.86[EUR][1000 genomes]
rs8069893	0.86[EUR][1000 genomes]
rs8071083	0.94[AFR][1000 genomes]
rs8072612	0.86[EUR][1000 genomes]
rs8076347	0.86[EUR][1000 genomes]
rs8079075	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9652838	0.82[EUR][1000 genomes]
rs9652840	0.86[EUR][1000 genomes]
rs9892781	0.86[EUR][1000 genomes]
rs9894680	0.86[EUR][1000 genomes]
rs9894898	0.86[EUR][1000 genomes]
rs9898031	0.86[EUR][1000 genomes]
rs9898464	0.86[EUR][1000 genomes]
rs9899006	0.86[EUR][1000 genomes]
rs9899336	0.86[EUR][1000 genomes]
rs9899345	0.86[EUR][1000 genomes]
rs9900019	0.86[EUR][1000 genomes]
rs9900538	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9900541	0.86[EUR][1000 genomes]
rs9901483	0.86[EUR][1000 genomes]
rs9901617	0.86[EUR][1000 genomes]
rs9901917	0.82[EUR][1000 genomes]
rs9902621	0.86[EUR][1000 genomes]
rs9904277	0.86[EUR][1000 genomes]
rs9904834	0.82[EUR][1000 genomes]
rs9905881	0.86[EUR][1000 genomes]
rs9907096	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9907291	0.86[EUR][1000 genomes]
rs9907564	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9907794	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9907966	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9907988	0.82[EUR][1000 genomes]
rs9908694	0.86[EUR][1000 genomes]
rs9908983	0.86[EUR][1000 genomes]
rs9909365	0.86[EUR][1000 genomes]
rs9911069	0.86[EUR][1000 genomes]
rs9911634	0.86[EUR][1000 genomes]
rs9911669	0.86[EUR][1000 genomes]
rs9911688	0.86[EUR][1000 genomes]
rs9912095	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9913044	0.82[EUR][1000 genomes]
rs9913596	0.86[EUR][1000 genomes]
rs9913769	0.86[EUR][1000 genomes]
rs9913795	0.86[EUR][1000 genomes]
rs9913957	0.86[EUR][1000 genomes]
rs9914302	0.86[EUR][1000 genomes]
rs9914665	0.86[EUR][1000 genomes]
rs9914757	0.82[EUR][1000 genomes]
rs9915509	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9916259	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9916369	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38046000-38059800	Weak transcription	Liver	Liver
2	chr17:38047400-38059200	Weak transcription	Primary T cells from cord blood	blood
3	chr17:38049200-38059800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:38049200-38075400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr17:38049800-38052600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr17:38050200-38051600	Enhancers	Primary B cells from cord blood	blood

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