Variant report

Variant	rs8071083
Chromosome Location	chr17:38052384-38052385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12943012	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12943206	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12948686	0.83[AFR][1000 genomes]
rs28420939	0.85[AFR][1000 genomes]
rs28651240	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34523816	0.80[AFR][1000 genomes]
rs34572227	0.80[AFR][1000 genomes]
rs35336365	0.94[AFR][1000 genomes]
rs36049276	0.80[AFR][1000 genomes]
rs9915509	0.87[AFR][1000 genomes]
rs9916369	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38046000-38059800	Weak transcription	Liver	Liver
2	chr17:38047400-38059200	Weak transcription	Primary T cells from cord blood	blood
3	chr17:38049200-38059800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:38049200-38075400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr17:38049800-38052600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr17:38051000-38059000	Weak transcription	Thymus	Thymus
7	chr17:38051200-38059400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr17:38051400-38059400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr17:38051400-38059800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr17:38051600-38059000	Weak transcription	Fetal Thymus	thymus
11	chr17:38051600-38059600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr17:38051800-38052600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr17:38052000-38059800	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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