Variant report

Variant	rs36049276
Chromosome Location	chr17:38061054-38061055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38056492..38058722-chr17:38059385..38061369,2	K562	blood:
2	chr17:38059982..38061801-chr17:38135947..38138444,2	K562	blood:
3	chr17:38059698..38061285-chr17:38079972..38081638,2	K562	blood:
4	chr17:38059991..38061678-chr17:38067497..38070160,2	K562	blood:
5	chr17:38060550..38063532-chr17:38063812..38066612,2	K562	blood:
6	chr17:38057190..38061550-chr17:38073399..38075666,3	K562	blood:
7	chr17:38027253..38029353-chr17:38058744..38061451,2	K562	blood:

Variant related genes	Relation type
ENSG00000073605	Chromatin interaction
ENSG00000108344	Chromatin interaction
ENSG00000172057	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12939306	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12943012	0.85[AFR][1000 genomes]
rs12943206	0.80[AFR][1000 genomes]
rs12943472	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12949178	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12950066	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12953265	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1377562	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28651240	0.83[AFR][1000 genomes]
rs34020832	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34225322	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34455157	0.87[AFR][1000 genomes]
rs34523816	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34572227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35789812	0.83[AFR][1000 genomes]
rs66565390	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs67135703	0.83[AFR][1000 genomes]
rs73304137	0.87[AFR][1000 genomes]
rs8071083	0.80[AFR][1000 genomes]
rs9916369	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38049200-38075400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr17:38052600-38074200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr17:38053000-38061200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr17:38055600-38077400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:38056200-38065400	Weak transcription	Placenta	Placenta
6	chr17:38056800-38061400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr17:38056800-38064000	Weak transcription	Brain Angular Gyrus	brain
8	chr17:38056800-38074600	Weak transcription	NH-A	brain
9	chr17:38057000-38068800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr17:38057200-38074400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr17:38057400-38075400	Weak transcription	HSMM	muscle
12	chr17:38057600-38076600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr17:38057800-38061600	Weak transcription	Spleen	Spleen
14	chr17:38057800-38077600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr17:38058000-38065200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr17:38058000-38067600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr17:38058000-38074600	Weak transcription	Left Ventricle	heart
18	chr17:38058200-38061200	Weak transcription	Brain Anterior Caudate	brain
19	chr17:38058200-38061600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr17:38058200-38076200	Weak transcription	Fetal Lung	lung
21	chr17:38058200-38077800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr17:38058400-38075400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr17:38058600-38062400	Enhancers	Dnd41	blood
24	chr17:38058600-38075400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr17:38058600-38077400	Weak transcription	Colon Smooth Muscle	Colon
26	chr17:38058800-38071800	Weak transcription	Stomach Mucosa	stomach
27	chr17:38059000-38061200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr17:38059000-38062400	Weak transcription	Fetal Brain Female	brain
29	chr17:38059000-38065200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr17:38059000-38070400	Strong transcription	Fetal Stomach	stomach
31	chr17:38059000-38071000	Strong transcription	Thymus	Thymus
32	chr17:38059000-38082400	Weak transcription	Psoas Muscle	Psoas
33	chr17:38059200-38070600	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr17:38059200-38075400	Weak transcription	Brain Hippocampus Middle	brain
35	chr17:38059400-38061200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr17:38059400-38061200	Weak transcription	Brain Germinal Matrix	brain
37	chr17:38059400-38063000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr17:38059400-38074000	Weak transcription	Small Intestine	intestine
39	chr17:38059600-38061600	Genic enhancers	Fetal Thymus	thymus
40	chr17:38059600-38061800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr17:38059600-38065000	Weak transcription	Lung	lung
42	chr17:38059600-38067800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr17:38059800-38063600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr17:38059800-38070800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr17:38059800-38077200	Weak transcription	Esophagus	oesophagus
46	chr17:38060000-38062200	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr17:38060000-38066600	Weak transcription	Brain Substantia Nigra	brain
48	chr17:38060000-38077400	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr17:38060200-38061200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr17:38060200-38061200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links