Variant report

Variant	rs66565390
Chromosome Location	chr17:38025939-38025940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12939306	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12943472	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12949178	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12950066	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12953265	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1377562	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28651240	0.81[AFR][1000 genomes]
rs34020832	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34225322	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34455157	0.85[AFR][1000 genomes]
rs34523816	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34572227	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35789812	0.81[AFR][1000 genomes]
rs36049276	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs67135703	0.82[AFR][1000 genomes]
rs73304137	0.85[AFR][1000 genomes]
rs9916369	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv1795575	chr17:37974075-38041762	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38024800-38027400	Enhancers	Primary B cells from peripheral blood	blood
2	chr17:38025200-38026400	Weak transcription	Primary B cells from cord blood	blood
3	chr17:38025200-38027000	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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