The 2.0 version of rSNPBase

Variant report

Variant rs12943206
Chromosome Location chr17:38058078-38058079
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:38046000-38059800 Weak transcription Liver Liver
2 chr17:38047400-38059200 Weak transcription Primary T cells from cord blood blood
3 chr17:38049200-38059800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr17:38049200-38075400 Weak transcription Brain Cingulate Gyrus brain
5 chr17:38051000-38059000 Weak transcription Thymus Thymus
6 chr17:38051200-38059400 Weak transcription Primary T helper naive cells fromperipheralblood blood
7 chr17:38051400-38059400 Weak transcription Primary T helper cells PMA-I stimulated --
8 chr17:38051400-38059800 Weak transcription Duodenum Mucosa Duodenum
9 chr17:38051600-38059000 Weak transcription Fetal Thymus thymus
10 chr17:38051600-38059600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
11 chr17:38052000-38059800 Weak transcription Primary B cells from peripheral blood blood
12 chr17:38052400-38059400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr17:38052600-38074200 Weak transcription Primary neutrophils fromperipheralblood blood
14 chr17:38052800-38058800 Weak transcription Primary hematopoietic stem cells short term culture blood
15 chr17:38053000-38061200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr17:38053200-38061000 Weak transcription Brain Inferior Temporal Lobe brain
17 chr17:38055400-38059200 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr17:38055600-38077400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr17:38055800-38059800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr17:38056000-38061000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr17:38056200-38065400 Weak transcription Placenta Placenta
22 chr17:38056400-38060400 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr17:38056600-38059600 Weak transcription Osteobl bone
24 chr17:38056800-38061400 Weak transcription Fetal Muscle Trunk muscle
25 chr17:38056800-38064000 Weak transcription Brain Angular Gyrus brain
26 chr17:38056800-38074600 Weak transcription NH-A brain
27 chr17:38057000-38059800 Weak transcription Primary T regulatory cells fromperipheralblood blood
28 chr17:38057000-38068800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr17:38057200-38059000 Weak transcription Fetal Stomach stomach
30 chr17:38057200-38060600 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr17:38057200-38074400 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr17:38057400-38075400 Weak transcription HSMM muscle
33 chr17:38057600-38058400 Strong transcription Primary T helper cells fromperipheralblood blood
34 chr17:38057600-38076600 Weak transcription iPS-18 Cell Line embryonic stem cell
35 chr17:38057800-38059400 Weak transcription Fetal Muscle Leg muscle
36 chr17:38057800-38060000 Weak transcription Fetal Intestine Small intestine
37 chr17:38057800-38061600 Weak transcription Spleen Spleen
38 chr17:38057800-38077600 Weak transcription Muscle Satellite Cultured Cells --
39 chr17:38058000-38061000 Weak transcription Gastric stomach
40 chr17:38058000-38065200 Weak transcription Placenta Amnion Placenta Amnion
41 chr17:38058000-38067600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr17:38058000-38074600 Weak transcription Left Ventricle heart

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Last update: Aug 31, 2015