Variant report

Variant	rs59246468
Chromosome Location	chr17:38059666-38059667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38056492..38058722-chr17:38059385..38061369,2	K562	blood:
2	chr17:38057190..38061550-chr17:38073399..38075666,3	K562	blood:
3	chr17:38027253..38029353-chr17:38058744..38061451,2	K562	blood:

Variant related genes	Relation type
ENSG00000073605	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1453558	1.00[EUR][1000 genomes]
rs16965388	1.00[EUR][1000 genomes]
rs28623237	1.00[EUR][1000 genomes]
rs35336365	1.00[ASN][1000 genomes]
rs35412794	1.00[ASN][1000 genomes]
rs73985221	1.00[EUR][1000 genomes]
rs73985222	1.00[EUR][1000 genomes]
rs73985223	1.00[EUR][1000 genomes]
rs73985224	1.00[EUR][1000 genomes]
rs73985226	1.00[EUR][1000 genomes]
rs73985227	1.00[EUR][1000 genomes]
rs73985229	1.00[EUR][1000 genomes]
rs73985230	1.00[EUR][1000 genomes]
rs8071135	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38046000-38059800	Weak transcription	Liver	Liver
2	chr17:38049200-38059800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr17:38049200-38075400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr17:38051400-38059800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr17:38052000-38059800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr17:38052600-38074200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr17:38053000-38061200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr17:38053200-38061000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr17:38055600-38077400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr17:38055800-38059800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr17:38056000-38061000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr17:38056200-38065400	Weak transcription	Placenta	Placenta
13	chr17:38056400-38060400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr17:38056800-38061400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr17:38056800-38064000	Weak transcription	Brain Angular Gyrus	brain
16	chr17:38056800-38074600	Weak transcription	NH-A	brain
17	chr17:38057000-38059800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr17:38057000-38068800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr17:38057200-38060600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr17:38057200-38074400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr17:38057400-38075400	Weak transcription	HSMM	muscle
22	chr17:38057600-38076600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr17:38057800-38060000	Weak transcription	Fetal Intestine Small	intestine
24	chr17:38057800-38061600	Weak transcription	Spleen	Spleen
25	chr17:38057800-38077600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr17:38058000-38061000	Weak transcription	Gastric	stomach
27	chr17:38058000-38065200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr17:38058000-38067600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr17:38058000-38074600	Weak transcription	Left Ventricle	heart
30	chr17:38058200-38061200	Weak transcription	Brain Anterior Caudate	brain
31	chr17:38058200-38061600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr17:38058200-38076200	Weak transcription	Fetal Lung	lung
33	chr17:38058200-38077800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr17:38058400-38075400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr17:38058600-38062400	Enhancers	Dnd41	blood
36	chr17:38058600-38075400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr17:38058600-38077400	Weak transcription	Colon Smooth Muscle	Colon
38	chr17:38058800-38061000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr17:38058800-38071800	Weak transcription	Stomach Mucosa	stomach
40	chr17:38059000-38061000	Enhancers	Primary T cells fromperipheralblood	blood
41	chr17:38059000-38061000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr17:38059000-38061200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr17:38059000-38062400	Weak transcription	Fetal Brain Female	brain
44	chr17:38059000-38065200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr17:38059000-38070400	Strong transcription	Fetal Stomach	stomach
46	chr17:38059000-38071000	Strong transcription	Thymus	Thymus
47	chr17:38059000-38082400	Weak transcription	Psoas Muscle	Psoas
48	chr17:38059200-38060000	Enhancers	Primary T cells from cord blood	blood
49	chr17:38059200-38060600	Enhancers	Primary hematopoietic stem cells	blood
50	chr17:38059200-38061000	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links