Variant report

Variant	rs13313564
Chromosome Location	chr17:37955555-37955556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs12709364	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12937330	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12938117	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12938617	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12938749	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12939306	0.81[YRI][hapmap]
rs12940616	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12942660	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12943472	0.81[YRI][hapmap]
rs12945253	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12946040	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12946188	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12946792	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12947480	1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12950066	0.82[YRI][hapmap]
rs12952146	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13313561	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13313573	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13380871	1.00[EUR][1000 genomes]
rs1453560	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1510475	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16965367	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17676923	0.83[EUR][1000 genomes]
rs2313429	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28392589	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28403951	1.00[EUR][1000 genomes]
rs28449671	1.00[EUR][1000 genomes]
rs28535471	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28537796	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28580691	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28621669	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28648398	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28661421	1.00[EUR][1000 genomes]
rs28695941	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28723017	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28842324	1.00[EUR][1000 genomes]
rs28880017	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28896477	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2941509	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3169572	1.00[CEU][hapmap]
rs34016964	1.00[EUR][1000 genomes]
rs34053394	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34291217	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34344462	1.00[EUR][1000 genomes]
rs34485135	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34518282	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34582264	0.88[EUR][1000 genomes]
rs34599546	1.00[EUR][1000 genomes]
rs34640000	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34654193	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34758895	0.92[EUR][1000 genomes]
rs34864615	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34925681	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34988504	1.00[EUR][1000 genomes]
rs35088469	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35105110	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35130019	0.96[EUR][1000 genomes]
rs35284336	0.82[AFR][1000 genomes]
rs35336365	0.86[EUR][1000 genomes]
rs35352075	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35397078	0.88[EUR][1000 genomes]
rs35405174	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35506518	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35770042	0.81[AFR][1000 genomes]
rs35938199	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36097841	1.00[EUR][1000 genomes]
rs4337325	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4622539	1.00[EUR][1000 genomes]
rs56928975	0.96[EUR][1000 genomes]
rs58075375	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66763967	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67135646	1.00[EUR][1000 genomes]
rs67571561	1.00[EUR][1000 genomes]
rs67600807	1.00[EUR][1000 genomes]
rs67605703	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71369788	1.00[EUR][1000 genomes]
rs71369791	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71369792	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7211998	1.00[EUR][1000 genomes]
rs7217133	1.00[EUR][1000 genomes]
rs7224641	1.00[EUR][1000 genomes]
rs73302152	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73304123	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7503018	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8067523	1.00[EUR][1000 genomes]
rs8068125	1.00[EUR][1000 genomes]
rs8068894	1.00[EUR][1000 genomes]
rs8069531	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8069893	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8072612	1.00[EUR][1000 genomes]
rs8076347	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8078409	0.88[EUR][1000 genomes]
rs8079075	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9652838	0.96[EUR][1000 genomes]
rs9652840	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9892781	1.00[EUR][1000 genomes]
rs9894370	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9894680	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9894898	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9898031	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9898464	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9899006	1.00[EUR][1000 genomes]
rs9899336	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9899345	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9900019	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9900538	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9900541	1.00[EUR][1000 genomes]
rs9901483	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9901617	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9901917	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9902621	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9904277	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9904834	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9905881	1.00[EUR][1000 genomes]
rs9907096	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs9907291	1.00[EUR][1000 genomes]
rs9907564	1.00[EUR][1000 genomes]
rs9907794	1.00[EUR][1000 genomes]
rs9907966	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9907988	0.96[EUR][1000 genomes]
rs9908694	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9908983	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9909365	1.00[EUR][1000 genomes]
rs9909432	0.89[EUR][1000 genomes]
rs9911069	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9911634	1.00[EUR][1000 genomes]
rs9911669	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9911688	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9912095	1.00[EUR][1000 genomes]
rs9913044	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9913596	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9913769	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9913795	1.00[EUR][1000 genomes]
rs9913957	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9914302	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9914516	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9914665	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9914757	0.96[EUR][1000 genomes]
rs9915509	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs9915797	0.92[EUR][1000 genomes]
rs9916259	1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs9916369	0.91[YRI][hapmap]
rs9941360	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9941391	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37939000-37961800	Weak transcription	Spleen	Spleen
2	chr17:37948400-37956800	Weak transcription	Small Intestine	intestine
3	chr17:37950000-37957000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr17:37950000-37957200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr17:37950000-37959400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr17:37950400-37956800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr17:37950800-37956000	Enhancers	Primary T cells from cord blood	blood
8	chr17:37951600-37956200	Weak transcription	Dnd41	blood
9	chr17:37951600-37969800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr17:37952400-37956800	Genic enhancers	GM12878-XiMat	blood
11	chr17:37952400-37959400	Genic enhancers	Primary B cells from peripheral blood	blood
12	chr17:37953400-37956000	Genic enhancers	Primary T cells fromperipheralblood	blood
13	chr17:37954000-37957000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr17:37954200-37957000	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr17:37954200-37959400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr17:37954600-37958200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr17:37955000-37958000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr17:37955000-37958800	Enhancers	Fetal Thymus	thymus
19	chr17:37955200-37956200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr17:37955200-37957200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr17:37955200-37957800	Enhancers	Thymus	Thymus
22	chr17:37955200-37958000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr17:37955400-37955600	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr17:37955400-37955600	Enhancers	NHEK	skin
25	chr17:37955400-37956600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr17:37955400-37956800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr17:37955400-37957200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr17:37955400-37957200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr17:37955400-37957400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr17:37955400-37957400	Genic enhancers	Primary B cells from cord blood	blood
31	chr17:37955400-37957600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr17:37955400-37957800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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