Variant report

Variant	rs9909432
Chromosome Location	chr17:37918106-37918107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37909095..37912398-chr17:37915882..37918594,4	MCF-7	breast:
2	chr17:37883289..37885763-chr17:37916085..37918485,2	K562	blood:
3	chr17:37907935..37911541-chr17:37914774..37918367,3	K562	blood:
4	chr17:37912031..37913626-chr17:37916861..37918993,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MIEN1-1	chr17:37913974-37920089	ENSG00000264198.1

Variant related genes	Relation type
ENSG00000141736	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs12709364	0.89[EUR][1000 genomes]
rs12937330	0.89[EUR][1000 genomes]
rs12938117	0.89[EUR][1000 genomes]
rs12938617	0.85[EUR][1000 genomes]
rs12938749	0.89[EUR][1000 genomes]
rs12940616	0.89[EUR][1000 genomes]
rs12942660	0.89[EUR][1000 genomes]
rs12945253	0.89[EUR][1000 genomes]
rs12946040	0.89[EUR][1000 genomes]
rs12946188	0.89[EUR][1000 genomes]
rs12946792	0.89[EUR][1000 genomes]
rs12947480	0.89[EUR][1000 genomes]
rs12952146	0.89[EUR][1000 genomes]
rs13313561	0.89[EUR][1000 genomes]
rs13313564	0.89[EUR][1000 genomes]
rs13313573	0.89[EUR][1000 genomes]
rs13380871	0.89[EUR][1000 genomes]
rs1453560	0.85[EUR][1000 genomes]
rs1510475	0.89[EUR][1000 genomes]
rs16965367	0.89[EUR][1000 genomes]
rs2313429	0.89[EUR][1000 genomes]
rs28392589	0.89[EUR][1000 genomes]
rs28403951	0.89[EUR][1000 genomes]
rs28449671	0.89[EUR][1000 genomes]
rs28535471	0.89[EUR][1000 genomes]
rs28537796	0.89[EUR][1000 genomes]
rs28580691	0.89[EUR][1000 genomes]
rs28621669	0.89[EUR][1000 genomes]
rs28648398	0.89[EUR][1000 genomes]
rs28661421	0.89[EUR][1000 genomes]
rs28695941	0.89[EUR][1000 genomes]
rs28723017	0.89[EUR][1000 genomes]
rs28842324	0.89[EUR][1000 genomes]
rs28880017	0.89[EUR][1000 genomes]
rs28896477	0.89[EUR][1000 genomes]
rs2941509	0.89[EUR][1000 genomes]
rs34016964	0.89[EUR][1000 genomes]
rs34053394	0.89[EUR][1000 genomes]
rs34291217	0.89[EUR][1000 genomes]
rs34344462	0.89[EUR][1000 genomes]
rs34485135	0.89[EUR][1000 genomes]
rs34518282	0.89[EUR][1000 genomes]
rs34599546	0.89[EUR][1000 genomes]
rs34640000	0.89[EUR][1000 genomes]
rs34654193	0.89[EUR][1000 genomes]
rs34758895	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34864615	0.85[EUR][1000 genomes]
rs34925681	0.89[EUR][1000 genomes]
rs34988504	0.89[EUR][1000 genomes]
rs35088469	0.89[EUR][1000 genomes]
rs35105110	0.89[EUR][1000 genomes]
rs35130019	0.85[EUR][1000 genomes]
rs35352075	0.89[EUR][1000 genomes]
rs35405174	0.89[EUR][1000 genomes]
rs35506518	0.89[EUR][1000 genomes]
rs35938199	0.89[EUR][1000 genomes]
rs36097841	0.89[EUR][1000 genomes]
rs4337325	0.89[EUR][1000 genomes]
rs4622539	0.89[EUR][1000 genomes]
rs56928975	0.85[EUR][1000 genomes]
rs58075375	0.89[EUR][1000 genomes]
rs66763967	0.89[EUR][1000 genomes]
rs67135646	0.89[EUR][1000 genomes]
rs67571561	0.89[EUR][1000 genomes]
rs67600807	0.89[EUR][1000 genomes]
rs67605703	0.89[EUR][1000 genomes]
rs71369788	0.89[EUR][1000 genomes]
rs71369791	0.89[EUR][1000 genomes]
rs71369792	0.89[EUR][1000 genomes]
rs7211998	0.89[EUR][1000 genomes]
rs7217133	0.89[EUR][1000 genomes]
rs7224641	0.89[EUR][1000 genomes]
rs73302152	0.89[EUR][1000 genomes]
rs73304123	0.89[EUR][1000 genomes]
rs7503018	0.89[EUR][1000 genomes]
rs8067523	0.89[EUR][1000 genomes]
rs8068125	0.89[EUR][1000 genomes]
rs8068894	0.89[EUR][1000 genomes]
rs8069531	0.89[EUR][1000 genomes]
rs8069893	0.89[EUR][1000 genomes]
rs8072612	0.89[EUR][1000 genomes]
rs8076347	0.89[EUR][1000 genomes]
rs8079075	0.89[EUR][1000 genomes]
rs9652838	0.85[EUR][1000 genomes]
rs9652840	0.89[EUR][1000 genomes]
rs9891131	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9892781	0.89[EUR][1000 genomes]
rs9894370	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9894680	0.89[EUR][1000 genomes]
rs9894898	0.89[EUR][1000 genomes]
rs9898031	0.89[EUR][1000 genomes]
rs9898464	0.89[EUR][1000 genomes]
rs9899006	0.89[EUR][1000 genomes]
rs9899336	0.89[EUR][1000 genomes]
rs9899345	0.89[EUR][1000 genomes]
rs9900019	0.89[EUR][1000 genomes]
rs9900538	0.89[EUR][1000 genomes]
rs9900541	0.89[EUR][1000 genomes]
rs9901483	0.89[EUR][1000 genomes]
rs9901617	0.89[EUR][1000 genomes]
rs9901917	0.85[EUR][1000 genomes]
rs9902621	0.89[EUR][1000 genomes]
rs9904277	0.89[EUR][1000 genomes]
rs9904834	0.85[EUR][1000 genomes]
rs9905881	0.89[EUR][1000 genomes]
rs9907096	0.89[EUR][1000 genomes]
rs9907291	0.89[EUR][1000 genomes]
rs9907564	0.89[EUR][1000 genomes]
rs9907794	0.89[EUR][1000 genomes]
rs9907966	0.89[EUR][1000 genomes]
rs9907988	0.85[EUR][1000 genomes]
rs9908694	0.89[EUR][1000 genomes]
rs9908983	0.89[EUR][1000 genomes]
rs9909365	0.89[EUR][1000 genomes]
rs9910678	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9911069	0.89[EUR][1000 genomes]
rs9911634	0.89[EUR][1000 genomes]
rs9911669	0.89[EUR][1000 genomes]
rs9911688	0.89[EUR][1000 genomes]
rs9912095	0.89[EUR][1000 genomes]
rs9913044	0.85[EUR][1000 genomes]
rs9913596	0.89[EUR][1000 genomes]
rs9913769	0.89[EUR][1000 genomes]
rs9913795	0.89[EUR][1000 genomes]
rs9913957	0.89[EUR][1000 genomes]
rs9914302	0.89[EUR][1000 genomes]
rs9914665	0.89[EUR][1000 genomes]
rs9914757	0.85[EUR][1000 genomes]
rs9915509	0.89[EUR][1000 genomes]
rs9915797	0.82[EUR][1000 genomes]
rs9916259	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908207	chr17:37709422-37922259	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37911800-37918600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr17:37912000-37930400	Weak transcription	Esophagus	oesophagus
3	chr17:37912800-37927400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr17:37913600-37926400	Genic enhancers	Fetal Thymus	thymus
5	chr17:37914400-37921200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr17:37914400-37921600	Weak transcription	Spleen	Spleen
7	chr17:37915400-37918800	Genic enhancers	Primary B cells from peripheral blood	blood
8	chr17:37915600-37918600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:37915800-37926000	Genic enhancers	Primary T cells fromperipheralblood	blood
10	chr17:37916000-37919200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:37916000-37922400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr17:37916400-37919200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr17:37917000-37922800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr17:37917000-37922800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr17:37917000-37925800	Genic enhancers	Thymus	Thymus
16	chr17:37917200-37921000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr17:37917200-37923000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr17:37917400-37919200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr17:37917400-37919200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr17:37917600-37918200	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr17:37917600-37919200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr17:37917600-37920000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr17:37917600-37923000	Strong transcription	Primary B cells from cord blood	blood
24	chr17:37917800-37919000	Weak transcription	Primary T cells from cord blood	blood
25	chr17:37917800-37920000	Genic enhancers	GM12878-XiMat	blood

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