Variant report

Variant	rs9941360
Chromosome Location	chr17:37959598-37959599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs12709364	0.84[AFR][1000 genomes]
rs12938749	0.84[AFR][1000 genomes]
rs12939306	0.91[YRI][hapmap]
rs12940616	0.81[AFR][1000 genomes]
rs12943472	0.91[YRI][hapmap]
rs12945253	0.92[YRI][hapmap]
rs12946188	0.92[YRI][hapmap]
rs12947480	0.82[YRI][hapmap]
rs12948686	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12950066	0.91[YRI][hapmap]
rs12950662	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12952146	0.81[AFR][1000 genomes]
rs13313564	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs13313573	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs1510475	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs28392589	0.89[AFR][1000 genomes]
rs28420939	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28580691	0.84[AFR][1000 genomes]
rs28651240	0.81[AFR][1000 genomes]
rs28880017	0.81[AFR][1000 genomes]
rs28896477	0.85[AFR][1000 genomes]
rs34053394	0.81[AFR][1000 genomes]
rs34291217	0.84[AFR][1000 genomes]
rs34640000	0.81[AFR][1000 genomes]
rs34864615	0.82[AFR][1000 genomes]
rs34925681	0.81[AFR][1000 genomes]
rs35088469	0.94[AFR][1000 genomes]
rs35105110	0.84[AFR][1000 genomes]
rs35284336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35352075	0.84[AFR][1000 genomes]
rs35506518	0.84[AFR][1000 genomes]
rs35789812	0.82[AFR][1000 genomes]
rs35938199	0.84[AFR][1000 genomes]
rs58075375	0.81[AFR][1000 genomes]
rs67605703	0.84[AFR][1000 genomes]
rs73302152	0.84[AFR][1000 genomes]
rs8073948	1.00[YRI][hapmap]
rs8079075	0.86[ASW][hapmap];0.92[YRI][hapmap]
rs9894680	0.84[AFR][1000 genomes]
rs9894898	0.84[AFR][1000 genomes]
rs9898031	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs9900019	0.92[YRI][hapmap]
rs9900538	0.91[YRI][hapmap]
rs9901617	0.84[AFR][1000 genomes]
rs9901917	0.81[AFR][1000 genomes]
rs9902621	0.81[AFR][1000 genomes]
rs9904277	0.81[AFR][1000 genomes]
rs9904834	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs9907096	0.92[YRI][hapmap]
rs9907966	0.86[ASW][hapmap];0.92[YRI][hapmap]
rs9908983	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs9911069	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs9911669	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs9911688	0.86[ASW][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs9913769	0.86[ASW][hapmap];0.92[YRI][hapmap]
rs9913957	0.86[ASW][hapmap];0.92[YRI][hapmap]
rs9914302	0.84[AFR][1000 genomes]
rs9914516	0.92[YRI][hapmap]
rs9914665	0.81[AFR][1000 genomes]
rs9915509	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs9916259	0.91[YRI][hapmap]
rs9916369	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs9941391	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37939000-37961800	Weak transcription	Spleen	Spleen
2	chr17:37951600-37969800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr17:37957200-37961000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr17:37957800-37961000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr17:37957800-37961200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr17:37957800-37968800	Weak transcription	Thymus	Thymus
7	chr17:37958200-37959600	Genic enhancers	Primary B cells from cord blood	blood
8	chr17:37958200-37961000	Weak transcription	GM12878-XiMat	blood
9	chr17:37958800-37961200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr17:37958800-37968600	Weak transcription	Fetal Thymus	thymus
11	chr17:37959000-37960800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr17:37959400-37959600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr17:37959400-37959600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr17:37959400-37960200	Weak transcription	Primary T cells from cord blood	blood
15	chr17:37959400-37960200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr17:37959400-37960400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr17:37959400-37960800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr17:37959400-37960800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr17:37959400-37961000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr17:37959400-37961200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr17:37959400-37961200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr17:37959400-37962800	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr17:37959400-37967200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr17:37959400-37968200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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