Variant report

Variant	rs8078409
Chromosome Location	chr17:38010759-38010760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38009036..38011369-chr17:38074696..38077048,2	K562	blood:

Variant related genes	Relation type
ENSG00000073605	Chromatin interaction

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs12709364	0.88[EUR][1000 genomes]
rs12937330	0.88[EUR][1000 genomes]
rs12938117	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12938617	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12938749	0.88[EUR][1000 genomes]
rs12940616	0.88[EUR][1000 genomes]
rs12942660	0.88[EUR][1000 genomes]
rs12945253	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12946040	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12946188	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12946792	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12947480	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12952146	0.88[EUR][1000 genomes]
rs13313561	0.88[EUR][1000 genomes]
rs13313564	0.88[EUR][1000 genomes]
rs13313573	0.88[EUR][1000 genomes]
rs13380871	0.88[EUR][1000 genomes]
rs1453560	0.84[EUR][1000 genomes]
rs1510475	0.88[EUR][1000 genomes]
rs16965367	0.88[EUR][1000 genomes]
rs2313429	0.88[EUR][1000 genomes]
rs28392589	0.88[EUR][1000 genomes]
rs28403951	0.88[EUR][1000 genomes]
rs28449671	0.88[EUR][1000 genomes]
rs28535471	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs28537796	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs28580691	0.88[EUR][1000 genomes]
rs28621669	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28648398	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs28661421	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28695941	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs28723017	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28842324	0.88[EUR][1000 genomes]
rs28880017	0.88[EUR][1000 genomes]
rs28896477	0.88[EUR][1000 genomes]
rs2941509	0.88[EUR][1000 genomes]
rs34016964	0.88[EUR][1000 genomes]
rs34053394	0.88[EUR][1000 genomes]
rs34291217	0.88[EUR][1000 genomes]
rs34344462	0.88[EUR][1000 genomes]
rs34485135	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34518282	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34582264	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34599546	0.88[EUR][1000 genomes]
rs34640000	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34654193	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34758895	0.81[EUR][1000 genomes]
rs34864615	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34925681	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34988504	0.88[EUR][1000 genomes]
rs35088469	0.88[EUR][1000 genomes]
rs35105110	0.88[EUR][1000 genomes]
rs35130019	0.84[EUR][1000 genomes]
rs35352075	0.88[EUR][1000 genomes]
rs35397078	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35405174	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35506518	0.88[EUR][1000 genomes]
rs35770042	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs35938199	0.88[EUR][1000 genomes]
rs36097841	0.88[EUR][1000 genomes]
rs4337325	0.88[EUR][1000 genomes]
rs4622539	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56928975	0.84[EUR][1000 genomes]
rs58075375	0.88[EUR][1000 genomes]
rs66763967	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs67135646	0.88[EUR][1000 genomes]
rs67571561	0.88[EUR][1000 genomes]
rs67600807	0.88[EUR][1000 genomes]
rs67605703	0.88[EUR][1000 genomes]
rs71369788	0.88[EUR][1000 genomes]
rs71369791	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs71369792	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7211998	0.88[EUR][1000 genomes]
rs7217133	0.88[EUR][1000 genomes]
rs7224641	0.88[EUR][1000 genomes]
rs73302152	0.88[EUR][1000 genomes]
rs73304123	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7503018	0.88[EUR][1000 genomes]
rs8067523	0.88[EUR][1000 genomes]
rs8068125	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8068894	0.88[EUR][1000 genomes]
rs8069531	0.88[EUR][1000 genomes]
rs8069893	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs8072612	0.88[EUR][1000 genomes]
rs8076347	0.88[EUR][1000 genomes]
rs8079075	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9652838	0.91[EUR][1000 genomes]
rs9652840	0.88[EUR][1000 genomes]
rs9892781	0.88[EUR][1000 genomes]
rs9894370	0.81[EUR][1000 genomes]
rs9894680	0.88[EUR][1000 genomes]
rs9894898	0.88[EUR][1000 genomes]
rs9898031	0.88[EUR][1000 genomes]
rs9898464	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9899006	0.88[EUR][1000 genomes]
rs9899336	0.88[EUR][1000 genomes]
rs9899345	0.88[EUR][1000 genomes]
rs9900019	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9900538	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9900541	0.88[EUR][1000 genomes]
rs9901483	0.88[EUR][1000 genomes]
rs9901617	0.88[EUR][1000 genomes]
rs9901917	0.84[EUR][1000 genomes]
rs9902621	0.88[EUR][1000 genomes]
rs9904277	0.88[EUR][1000 genomes]
rs9904834	0.83[EUR][1000 genomes]
rs9905881	0.88[EUR][1000 genomes]
rs9907096	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9907291	0.88[EUR][1000 genomes]
rs9907564	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9907794	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9907966	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9907988	0.91[EUR][1000 genomes]
rs9908694	0.88[EUR][1000 genomes]
rs9908983	0.88[EUR][1000 genomes]
rs9909365	0.88[EUR][1000 genomes]
rs9911069	0.88[EUR][1000 genomes]
rs9911634	0.88[EUR][1000 genomes]
rs9911669	0.88[EUR][1000 genomes]
rs9911688	0.88[EUR][1000 genomes]
rs9912095	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9913044	0.84[EUR][1000 genomes]
rs9913596	0.88[EUR][1000 genomes]
rs9913769	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9913795	0.88[EUR][1000 genomes]
rs9913957	0.88[EUR][1000 genomes]
rs9914302	0.88[EUR][1000 genomes]
rs9914665	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9914757	0.91[EUR][1000 genomes]
rs9915509	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9915797	0.96[EUR][1000 genomes]
rs9916259	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064787	chr17:37892843-38054410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv543342	chr17:37892843-38054410	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv1795575	chr17:37974075-38041762	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38000800-38017400	Weak transcription	Thymus	Thymus
2	chr17:38004000-38010800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:38004400-38016800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr17:38005200-38014200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr17:38006200-38017400	Weak transcription	Fetal Thymus	thymus
6	chr17:38007200-38016600	Genic enhancers	Primary B cells from peripheral blood	blood
7	chr17:38008400-38012800	Genic enhancers	Primary B cells from cord blood	blood
8	chr17:38009000-38016800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr17:38009200-38010800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr17:38009200-38016200	Weak transcription	Primary T cells from cord blood	blood
11	chr17:38009400-38010800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr17:38009600-38011000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr17:38009600-38011200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:38009600-38011200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:38009600-38011400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr17:38010000-38011800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr17:38010200-38012600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr17:38010400-38012000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr17:38010600-38012000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
20	chr17:38010600-38012600	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr17:38010600-38013400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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