Variant report

Variant	rs1294669
Chromosome Location	chr4:106653816-106653817
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10516523	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11934139	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11941690	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12639750	0.83[EUR][1000 genomes]
rs1294667	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1294670	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1294673	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13148869	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17036098	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17262764	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2080789	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2544395	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2544412	0.80[AMR][1000 genomes]
rs2544413	0.80[AMR][1000 genomes]
rs28628106	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3756260	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4699196	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6820200	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7680134	0.81[AMR][1000 genomes]
rs7684442	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000947	chr4:106651153-106701679	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106630600-106656200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:106630600-106656200	Weak transcription	Esophagus	oesophagus
3	chr4:106630800-106656000	Weak transcription	Ovary	ovary
4	chr4:106630800-106656200	Weak transcription	Left Ventricle	heart
5	chr4:106630800-106656200	Weak transcription	Thymus	Thymus
6	chr4:106630800-106658400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:106631000-106654600	Weak transcription	Fetal Intestine Large	intestine
8	chr4:106631000-106656000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:106631000-106656200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:106631000-106658200	Weak transcription	Right Ventricle	heart
11	chr4:106631000-106659000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:106631000-106663000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:106631000-106669400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:106631400-106656000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr4:106631400-106658800	Weak transcription	A549	lung
16	chr4:106634000-106655800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:106634000-106655800	Weak transcription	Liver	Liver
18	chr4:106634000-106693200	Weak transcription	K562	blood
19	chr4:106634600-106656200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:106635600-106655600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr4:106635600-106656200	Weak transcription	Aorta	Aorta
22	chr4:106635600-106656200	Weak transcription	Brain Anterior Caudate	brain
23	chr4:106635600-106656800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr4:106635600-106658400	Weak transcription	Osteobl	bone
25	chr4:106635600-106665000	Weak transcription	HUVEC	blood vessel
26	chr4:106635600-106669800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr4:106636200-106658800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr4:106636400-106656800	Weak transcription	NHEK	skin
29	chr4:106637200-106660800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr4:106637800-106656200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:106640800-106656000	Weak transcription	Fetal Stomach	stomach
32	chr4:106640800-106656200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr4:106641000-106656000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr4:106641400-106656600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr4:106641600-106654600	Weak transcription	Fetal Muscle Leg	muscle
36	chr4:106642000-106656400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr4:106643000-106662600	Weak transcription	Fetal Kidney	kidney
38	chr4:106645400-106658800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr4:106646800-106656200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr4:106647200-106654400	Weak transcription	Adipose Nuclei	Adipose
41	chr4:106647200-106656800	Weak transcription	Brain Substantia Nigra	brain
42	chr4:106648000-106656200	Weak transcription	Fetal Thymus	thymus
43	chr4:106648000-106669800	Weak transcription	HSMM	muscle
44	chr4:106648200-106658800	Weak transcription	Fetal Brain Male	brain
45	chr4:106649000-106655000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr4:106650200-106656200	Weak transcription	Gastric	stomach
47	chr4:106650800-106654600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr4:106650800-106654600	Weak transcription	Fetal Brain Female	brain
49	chr4:106650800-106655600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr4:106650800-106655600	Weak transcription	Primary hematopoietic stem cells	blood

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