Variant report

Variant	rs17036098
Chromosome Location	chr4:106597452-106597453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10023798	0.81[CEU][hapmap]
rs10025790	0.93[CEU][hapmap];0.84[JPT][hapmap]
rs10516523	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11722731	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11934139	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11941690	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12639750	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1294667	0.81[EUR][1000 genomes]
rs1294669	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1294670	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1294673	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13138544	0.87[CEU][hapmap]
rs13147012	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13148869	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1447093	0.85[CEU][hapmap]
rs1447094	0.81[CEU][hapmap]
rs17262764	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2044536	0.93[CEU][hapmap]
rs2080789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2544395	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2544412	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2544413	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2553449	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2553458	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2553462	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2553468	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28628106	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3756260	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3796920	0.81[CEU][hapmap]
rs4699196	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6533218	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6820200	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6833345	0.81[CEU][hapmap]
rs7680134	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7684839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7685231	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106559400-106602800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:106569800-106600400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:106578600-106607000	Weak transcription	Small Intestine	intestine
4	chr4:106580400-106603400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:106580400-106613200	Weak transcription	Fetal Intestine Small	intestine
6	chr4:106587800-106629000	Weak transcription	Lung	lung
7	chr4:106588800-106600200	Weak transcription	Pancreas	Pancrea
8	chr4:106589200-106598800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:106592600-106598600	Weak transcription	Fetal Intestine Large	intestine
10	chr4:106593000-106603800	Weak transcription	Aorta	Aorta
11	chr4:106594000-106603400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr4:106595400-106603000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:106595600-106600400	Weak transcription	HSMM	muscle
14	chr4:106597000-106610000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr4:106597200-106603400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:106597400-106602800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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