Variant report

Variant	rs6533218
Chromosome Location	chr4:106753845-106753846
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106752778..106754431-chr4:106756696..106759050,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10516523	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11722731	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11933386	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11933393	0.81[ASN][1000 genomes]
rs11933466	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11934139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11941690	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.85[EUR][1000 genomes]
rs12639750	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1294667	0.80[AFR][1000 genomes]
rs1294670	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1294673	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13120110	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13148869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17036098	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs17262764	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2080789	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2544395	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2544398	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2544404	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2544405	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2544406	0.89[CHB][hapmap]
rs2544408	0.89[CHB][hapmap]
rs2544409	0.89[CHB][hapmap]
rs2544412	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544413	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544421	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2544423	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2544425	0.89[CHB][hapmap]
rs2553432	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2553434	0.86[CHB][hapmap]
rs2553436	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2553438	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2553440	0.84[ASN][1000 genomes]
rs2553441	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2553445	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2553449	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2553453	0.89[CHB][hapmap]
rs2553458	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2553462	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2553468	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2553472	0.81[ASN][1000 genomes]
rs28628106	0.85[EUR][1000 genomes]
rs3756260	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4699196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6533221	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6820200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7684839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7685231	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106695200-106757000	Weak transcription	Primary B cells from cord blood	blood
2	chr4:106703200-106755600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:106729200-106763400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:106730200-106764200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:106730400-106756400	Weak transcription	Fetal Stomach	stomach
6	chr4:106730400-106757600	Weak transcription	Psoas Muscle	Psoas
7	chr4:106730800-106761800	Weak transcription	HSMM	muscle
8	chr4:106732600-106755800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:106734400-106756400	Weak transcription	Fetal Thymus	thymus
10	chr4:106737000-106768600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:106737200-106754200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:106738800-106757200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:106741600-106756400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:106742000-106761200	Weak transcription	HSMMtube	muscle
15	chr4:106742000-106763600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:106742000-106766200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:106742200-106757000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:106742400-106766600	Weak transcription	Aorta	Aorta
19	chr4:106742600-106756200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:106743200-106756200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:106743400-106757000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:106743600-106768600	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr4:106744000-106755600	Weak transcription	Fetal Lung	lung
24	chr4:106744000-106768600	Weak transcription	Adipose Nuclei	Adipose
25	chr4:106744200-106764400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr4:106744800-106756600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:106745000-106763800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr4:106745200-106759400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:106745400-106757600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr4:106745600-106756400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr4:106745800-106769000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr4:106746000-106756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr4:106746000-106772200	Weak transcription	Left Ventricle	heart
34	chr4:106746200-106756200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr4:106746400-106776400	Weak transcription	Gastric	stomach
36	chr4:106746800-106755400	Weak transcription	GM12878-XiMat	blood
37	chr4:106747000-106768200	Weak transcription	K562	blood
38	chr4:106747000-106771800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr4:106747400-106757200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:106747400-106767000	Weak transcription	A549	lung
41	chr4:106747400-106772000	Weak transcription	Fetal Intestine Large	intestine
42	chr4:106748200-106763200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr4:106748600-106756400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr4:106748600-106756400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr4:106748600-106756400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:106748600-106756400	Weak transcription	Thymus	Thymus
47	chr4:106748800-106755400	Weak transcription	Dnd41	blood
48	chr4:106749400-106756200	Weak transcription	Primary T cells from cord blood	blood
49	chr4:106751200-106766200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr4:106751800-106767800	Weak transcription	NH-A	brain

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